RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 AURKBQ96GD4 344 aaPredicted RBP14.73□□□□□ -0.05
CUX1-214ENST00000550008 BOCQ9BWV1 1114 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 TDRD1Q9BXT4 1180 aaKnown RBP14.73□□□□□ -0.05
CUX1-214ENST00000550008 NLE1Q9NVX2 485 aaPredicted RBP14.73□□□□□ -0.05
CUX1-214ENST00000550008 ABHD14A-ACY1A0A1B0GW23 586 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 ARSAP15289 507 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 HNF1BP35680 557 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 RPS9P46781 194 aaKnown RBP14.73□□□□□ -0.05
CUX1-214ENST00000550008 NTHL1P78549 312 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 SPANXN4Q5MJ08 99 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 C22orf39Q6P5X5 142 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 TMEM173Q86WV6 379 aaPredicted RBP14.73□□□□□ -0.05
CUX1-214ENST00000550008 ZNF540Q8NDQ6 660 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 EXOSC8Q96B26 276 aaKnown RBP14.73□□□□□ -0.05
CUX1-214ENST00000550008 ROPN1LQ96C74 230 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 ZFYVE19Q96K21 471 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 C6orf62Q9GZU0 229 aaPredicted RBP14.73□□□□□ -0.05
CUX1-214ENST00000550008 ZDHHC3Q9NYG2 299 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 ENTPD4Q9Y227 616 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 RP1L1Q8IWN7 2480 aaPredicted RBP14.73□□□□□ -0.05
CUX1-214ENST00000550008 TGFB1P01137 390 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 PRNPP04156 253 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 NR2F1P10589 423 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 SLC6A2P23975 617 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 SPIBQ01892 262 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 PRKCQQ04759 706 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 TSPAN33Q86UF1 283 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 VANGL1Q8TAA9 524 aaPredicted RBP14.73□□□□□ -0.05
CUX1-214ENST00000550008 XAGE5Q8WWM1 108 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 CLIP3Q96DZ5 547 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 SLC45A3Q96JT2 553 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 MKS1Q9NXB0 559 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 RPS6KA6Q9UK32 745 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 ARPC2O15144 300 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 LDB2O43679 373 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 RPL10P27635 214 aaKnown RBP14.73□□□□□ -0.05
CUX1-214ENST00000550008 SLC6A4P31645 630 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 C1QTNF8P60827 252 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 SF1Q15637 639 aaKnown RBP14.73□□□□□ -0.05
CUX1-214ENST00000550008 GPRC6AQ5T6X5 926 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 CYP4V2Q6ZWL3 525 aaPredicted RBP14.73□□□□□ -0.05
CUX1-214ENST00000550008 SETD9Q8NE22 299 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 CXorf40BQ96DE9 158 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 CENPNQ96H22 339 aaPredicted RBP14.73□□□□□ -0.05
CUX1-214ENST00000550008 DERL2Q9GZP9 239 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 CSNK1G1Q9HCP0 422 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 RAD18Q9NS91 495 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 COQ6Q9Y2Z9 468 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 TPRKBQ9Y3C4 175 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 SPACA6W5XKT8 324 aa14.73□□□□□ -0.05
CUX1-214ENST00000550008 PHIPQ8WWQ0 1821 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 MCM3APO60318 1980 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 SUV39H1O43463 412 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 JUNP05412 331 aaKnown RBP14.72□□□□□ -0.05
CUX1-214ENST00000550008 PLA2G16P53816 162 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 TPRG1Q6ZUI0 275 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 ISCA2Q86U28 154 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 PIANPQ8IYJ0 282 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 REM2Q8IYK8 340 aaPredicted RBP14.72□□□□□ -0.05
CUX1-214ENST00000550008 PHF10Q8WUB8 498 aaKnown RBP14.72□□□□□ -0.05
CUX1-214ENST00000550008 POF1BQ8WVV4 589 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 ASB9Q96DX5 294 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 SORT1Q99523 831 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 KATNBL1Q9H079 304 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 NCKAP1Q9Y2A7 1128 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 GSAPA4D1B5 854 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 SMAD6O43541 496 aaKnown RBP14.72□□□□□ -0.05
CUX1-214ENST00000550008 NFATC1O95644 943 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 POU2F1P14859 743 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 TMED10P49755 219 aaKnown RBP14.72□□□□□ -0.05
CUX1-214ENST00000550008 SH3BP2P78314 561 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 LAPTM5Q13571 262 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 GPR33Q49SQ1 333 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 RAB41Q5JT25 222 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 FAM46CQ5VWP2 391 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 PROSER1Q86XN7 944 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 VPS35Q96QK1 796 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 NUSAP1Q9BXS6 441 aaKnown RBP14.72□□□□□ -0.05
CUX1-214ENST00000550008 ASB3Q9Y575 518 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 INSL6Q9Y581 213 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 COL5A3P25940 1745 aaPredicted RBP14.72□□□□□ -0.05
CUX1-214ENST00000550008 DIRAS1O95057 198 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 MAGEA6P43360 314 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 DEF8Q6ZN54 512 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 STARD8Q92502 1023 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 PTERQ96BW5 349 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 ADI1Q9BV57 179 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 C1orf21Q9H246 121 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 SMPD3Q9NY59 655 aaPredicted RBP14.72□□□□□ -0.05
CUX1-214ENST00000550008 VPS4AQ9UN37 437 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 USP3Q9Y6I4 520 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 COL4A5P29400 1685 aa14.72□□□□□ -0.05
CUX1-214ENST00000550008 ANXA11P50995 505 aaKnown RBP14.71□□□□□ -0.05
CUX1-214ENST00000550008 MTTPP55157 894 aa14.71□□□□□ -0.05
CUX1-214ENST00000550008 CCNYL2Q5T2Q4 361 aa14.71□□□□□ -0.05
CUX1-214ENST00000550008 INTS11Q5TA45 600 aaKnown RBP14.71□□□□□ -0.05
CUX1-214ENST00000550008 OR4F3Q6IEY1 312 aa14.71□□□□□ -0.05
CUX1-214ENST00000550008 KDM1BQ8NB78 822 aa14.71□□□□□ -0.05
CUX1-214ENST00000550008 RTP3Q9BQQ7 232 aa14.71□□□□□ -0.05
CUX1-214ENST00000550008 TSC22D4Q9Y3Q8 395 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms