RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 OR2T7P0C7T2 308 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 ACP2P11117 423 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 PLA2G2AP14555 144 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 MTHFRP42898 656 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 TNNT3P45378 269 aaPredicted RBP3.93□□□□□ -1.78
VPS29-205ENST00000548539 MMP15P51511 669 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 DSCR9P59020 149 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 SEC61A1P61619 476 aaKnown RBP3.93□□□□□ -1.78
VPS29-205ENST00000548539 ZXDBP98169 803 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 PNRC1Q12796 327 aaPredicted RBP3.93□□□□□ -1.78
VPS29-205ENST00000548539 PTPRCAPQ14761 206 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 NR1D2Q14995 579 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 C9orf50Q5SZB4 431 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 NDUFAF5Q5TEU4 345 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 PLA2G4FQ68DD2 849 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 FBXL22Q6P050 247 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 KLC3Q6P597 504 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 PLXDC2Q6UX71 529 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 ERN2Q76MJ5 926 aaKnown RBP3.93□□□□□ -1.78
VPS29-205ENST00000548539 METTL23Q86XA0 190 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 PTOV1Q86YD1 416 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.93□□□□□ -1.78
VPS29-205ENST00000548539 SETD6Q8TBK2 473 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 DNASE2BQ8WZ79 361 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 SLAMF9Q96A28 289 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 RTP4Q96DX8 246 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 JAKMIP1Q96N16 626 aaKnown RBP3.93□□□□□ -1.78
VPS29-205ENST00000548539 SFXN2Q96NB2 322 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 SEPHS2Q99611 448 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 NEURL2Q9BR09 285 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 TMEM204Q9BSN7 226 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 THUMPD3Q9BV44 507 aaKnown RBP3.93□□□□□ -1.78
VPS29-205ENST00000548539 TM6SF1Q9BZW5 370 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 WNT5BQ9H1J7 359 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 UBTD1Q9HAC8 227 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 MYNNQ9NPC7 610 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 PTTG2Q9NZH5 202 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 PADI2Q9Y2J8 665 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 PCDHAC2Q9Y5I4 1007 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 POMT1Q9Y6A1 747 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 SAA2-SAA4A0A096LPE2 208 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 ELOVL7A1L3X0 281 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 HYKKA2RU49 373 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 TMEM221A6NGB7 291 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 IFITM10A6NMD0 228 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 C15orf62A8K5M9 175 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 BUD23O43709 281 aaKnown RBP3.92□□□□□ -1.78
VPS29-205ENST00000548539 OR10H2O60403 315 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 SYNCRIPO60506 623 aaKnown RBP3.92□□□□□ -1.78
VPS29-205ENST00000548539 ACSL3O95573 720 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 TFAP2AP05549 437 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 ATP5BP06576 529 aaKnown RBP3.92□□□□□ -1.78
VPS29-205ENST00000548539 DANCRP0C864 163 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 CKMT2P17540 419 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 GM2AP17900 193 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 CBLP22681 906 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 MPZP25189 248 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 PTPN3P26045 913 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 ARCN1P48444 511 aaKnown RBP3.92□□□□□ -1.78
VPS29-205ENST00000548539 HILS1P60008 231 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 RBP5P82980 135 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 PPIGQ13427 754 aaKnown RBP eCLIP3.92□□□□□ -1.78
VPS29-205ENST00000548539 ZNF273Q14593 569 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 ASIC2Q16515 512 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 PET117Q6UWS5 81 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 PLEKHM3Q6ZWE6 761 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 DET1Q7L5Y6 550 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 DGLUCYQ7Z3D6 616 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 SLC9B2Q86UD5 537 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 SPATA2LQ8IUW3 424 aaPredicted RBP3.92□□□□□ -1.78
VPS29-205ENST00000548539 CRYBG2Q8N1P7 616 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 PAPD5Q8NDF8 572 aaKnown RBP3.92□□□□□ -1.78
VPS29-205ENST00000548539 SPSB1Q96BD6 273 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 ARSGQ96EG1 525 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 STAMBPL1Q96FJ0 436 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 OTUB1Q96FW1 271 aaPredicted RBP3.92□□□□□ -1.78
VPS29-205ENST00000548539 BICD1Q96G01 975 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 MED30Q96HR3 178 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 TTC14Q96N46 770 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 SPAG5Q96R06 1193 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 SLX1AQ9BQ83 275 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 MGME1Q9BQP7 344 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 LMF2Q9BU23 707 aaKnown RBP3.92□□□□□ -1.78
VPS29-205ENST00000548539 POU2F3Q9UKI9 436 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 GTF3C4Q9UKN8 822 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 DLGAP4Q9Y2H0 992 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 GRIP1Q9Y3R0 1128 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 FLT1P17948 1338 aa3.92□□□□□ -1.78
VPS29-205ENST00000548539 TEX13DA0A0J9YY54 714 aaPredicted RBP3.91□□□□□ -1.78
VPS29-205ENST00000548539 TGDSO95455 350 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 LDLRP01130 860 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 RAB40ALP0C0E4 278 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 PDGFRAP16234 1089 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 MUTP22033 750 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 MCCP23508 829 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 TNFRSF8P28908 595 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 SLC9A3P48764 834 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 FUT6P51993 359 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 CAPZA1P52907 286 aa3.91□□□□□ -1.78
VPS29-205ENST00000548539 MAPK12P53778 367 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms