RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PPP2CAP67775 309 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 CDK3Q00526 305 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 RPL6Q02878 288 aaKnown RBP7.28□□□□□ -1.24
CD44-228ENST00000528455 PTK2BQ14289 1009 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 IRF4Q15306 451 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 CSRP2Q16527 193 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 ZNF789Q5FWF6 425 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 NKAPLQ5M9Q1 402 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 WDR45BQ5MNZ6 344 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 MROH9Q5TGP6 573 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 AGBL2Q5U5Z8 902 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 FAM45BPQ6NSW5 357 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 CDPF1Q6NVV7 123 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 ZNF549Q6P9A3 640 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 LRFN4Q6PJG9 635 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 SH2D5Q6ZV89 423 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 LPCAT2Q7L5N7 544 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 DGLUCYQ7Z3D6 616 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 ABI3BPQ7Z7G0 1075 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 ADGRG6Q86SQ4 1221 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 LCA5Q86VQ0 697 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 PHYKPLQ8IUZ5 450 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 FAM20CQ8IXL6 584 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 CLDN19Q8N6F1 224 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 OTUD6BQ8N6M0 293 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 TMEM145Q8NBT3 493 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 GDAP1Q8TB36 358 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 FAM45AQ8TCE6 357 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 ISL2Q96A47 359 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 FUBP1Q96AE4 644 aaKnown RBP7.28□□□□□ -1.24
CD44-228ENST00000528455 SKA1Q96BD8 255 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 TSPAN17Q96FV3 270 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 PDLIM5Q96HC4 596 aaKnown RBP7.28□□□□□ -1.24
CD44-228ENST00000528455 SERAC1Q96JX3 654 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 CABS1Q96KC9 395 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 LINC00615Q96LM1 132 aaPredicted RBP7.28□□□□□ -1.24
CD44-228ENST00000528455 PANX3Q96QZ0 392 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 ORAI3Q9BRQ5 295 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 AARSD1Q9BTE6 412 aaKnown RBP7.28□□□□□ -1.24
CD44-228ENST00000528455 TSSK1BQ9BXA7 367 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 LGR4Q9BXB1 951 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 CCDC68Q9H2F9 335 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 POPDC3Q9HBV1 291 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 SYTL2Q9HCH5 934 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 PARD6AQ9NPB6 346 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 MED4Q9NPJ6 270 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 FBXO6Q9NRD1 293 aaPredicted RBP7.28□□□□□ -1.24
CD44-228ENST00000528455 DLL3Q9NYJ7 618 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 ATXN10Q9UBB4 475 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 TBK1Q9UHD2 729 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 DCDC2Q9UHG0 476 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 INVSQ9Y283 1065 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 SLC17A4Q9Y2C5 497 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 HIF3AQ9Y2N7 669 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 DHRS7Q9Y394 339 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 PCDHGB7Q9Y5F8 929 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 LAMA1P25391 3075 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 FAM95CA0A1B0GW59 222 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 UBA6A0AVT1 1052 aaPredicted RBP7.27□□□□□ -1.25
CD44-228ENST00000528455 CCDC189A1A4V9 331 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 TRIM49D1C9J1S8 452 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 CACNB4O00305 520 aaPredicted RBP7.27□□□□□ -1.25
CD44-228ENST00000528455 INPP4BO15327 924 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 SGTAO43765 313 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 NUAK1O60285 661 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 OR1I1O60431 355 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 RFPL1O75677 317 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 ASMTLO95671 621 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 FTH1P02794 183 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 MT-ND3P03897 115 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 PCCBP05166 539 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 STMN1P16949 149 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 KRT15P19012 456 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 CHRM3P20309 590 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 HTR1BP28222 390 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 CD38P28907 300 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 AKT1P31749 480 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 IGFALSP35858 605 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 DPP6P42658 865 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 CCT5P48643 541 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 CSRP3P50461 194 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 SLC18A1P54219 525 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 SLC12A2P55011 1212 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 KIAA1024LP59773 190 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 MPP1Q00013 466 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 B4GALNT1Q00973 533 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 PLOD1Q02809 727 aaPredicted RBP7.27□□□□□ -1.25
CD44-228ENST00000528455 SLC18A2Q05940 514 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 GTF2H3Q13889 308 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 USP10Q14694 798 aaKnown RBP7.27□□□□□ -1.25
CD44-228ENST00000528455 EFTUD2Q15029 972 aaKnown RBP eCLIP7.27□□□□□ -1.25
CD44-228ENST00000528455 INSCQ1MX18 579 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 PLK5Q496M5 336 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 HECTD2Q5U5R9 776 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 PTRHD1Q6GMV3 140 aaKnown RBP7.27□□□□□ -1.25
CD44-228ENST00000528455 TMEM220Q6QAJ8 160 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 PRR23CQ6ZRP0 262 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 Q6ZSR6 202 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 TRABD2AQ86V40 505 aa7.27□□□□□ -1.25
CD44-228ENST00000528455 HEATR4Q86WZ0 1026 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms