RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 AKTIPQ9H8T0 292 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 SP140LQ9H930 580 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 SF1Q15637 639 aaKnown RBP16.19■□□□□ 0.18
COL7A1-210ENST00000487017 DPY19L1Q2PZI1 675 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 RGMBQ6NW40 437 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 FUT10Q6P4F1 479 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 USP43Q70EL4 1123 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 CANT1Q8WVQ1 401 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 TWNKQ96RR1 684 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 ZNF347Q96SE7 839 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 TMEM27Q9HBJ8 222 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 C11orf16Q9NQ32 467 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 ZNF214Q9UL59 606 aaPredicted RBP16.19■□□□□ 0.18
COL7A1-210ENST00000487017 ZNF541Q9H0D2 1346 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 GMFGO60234 142 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 LTN1O94822 1766 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 ALDH4A1P30038 563 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 SLC35G1Q2M3R5 365 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 VARS2Q5ST30 1063 aaKnown RBP16.19■□□□□ 0.18
COL7A1-210ENST00000487017 TAF8Q7Z7C8 310 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 SRFBP1Q8NEF9 429 aaKnown RBP16.19■□□□□ 0.18
COL7A1-210ENST00000487017 CNPPD1Q9BV87 410 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 BCO2Q9BYV7 579 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 ZDHHC2Q9UIJ5 367 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 TLR6Q9Y2C9 796 aa16.19■□□□□ 0.18
COL7A1-210ENST00000487017 RBMX2Q9Y388 322 aaKnown RBP16.19■□□□□ 0.18
COL7A1-210ENST00000487017 POP4O95707 220 aaKnown RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 SELPP16109 830 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 RGS8P57771 180 aaPredicted RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 SLC39A4Q6P5W5 647 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 ZC3H3Q8IXZ2 948 aaKnown RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 GPN1Q9HCN4 374 aaPredicted RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 PHPT1Q9NRX4 125 aaPredicted RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 ZNF282Q9UDV7 671 aaPredicted RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 MYCLP1P12525 358 aaPredicted RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 POU2F1P14859 743 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 GMFBP60983 142 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 RFTN1Q14699 578 aaPredicted RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 C12orf42Q96LP6 360 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 ZNF395Q9H8N7 513 aaPredicted RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 FMN2Q9NZ56 1722 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 MCIDASD6RGH6 385 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 K7EPI3 171 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 GADD45GO95257 159 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 CD247P20963 164 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 HOXD13P35453 343 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 FLT3LGP49771 235 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 RAB15P59190 212 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 CBX3Q13185 183 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 PTGES3Q15185 160 aaKnown RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 TNFAIP8L3Q5GJ75 292 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 TIFABQ6ZNK6 161 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 FAM124AQ86V42 546 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 CFAP206Q8IYR0 622 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 PHC3Q8NDX5 983 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 OR13C4Q8NGS5 318 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 RFKQ969G6 155 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 TAMM41Q96BW9 452 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 YTHDF1Q9BYJ9 559 aaKnown RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 TRPV5Q9NQA5 729 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 PIGVQ9NUD9 493 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 CLEC4AQ9UMR7 237 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 H3BNH8 94 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 LAG3P18627 525 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 KCNA10Q16322 511 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 RTL4Q6ZR62 310 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 CHST15Q7LFX5 561 aaPredicted RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 NKIRAS2Q9NYR9 191 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 OAZ3Q9UMX2 235 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 PCDHGA11Q9Y5H2 935 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 OR51F1A6NGY5 319 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 DLX3O60479 287 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 DUSP11O75319 330 aaKnown RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 TOP3BO95985 862 aaKnown RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 AZGP1P25311 298 aaKnown RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 GAD2Q05329 585 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 TCEAL1Q15170 157 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 ZBED5Q49AG3 693 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 CES5AQ6NT32 575 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 CYP2U1Q7Z449 544 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 RELL1Q8IUW5 271 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 IQCF2Q8IXL9 164 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 SCAMP5Q8TAC9 235 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 PIGXQ8TBF5 258 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 MCCC1Q96RQ3 725 aaPredicted RBP16.18■□□□□ 0.18
COL7A1-210ENST00000487017 OSBPL2Q9H1P3 480 aa16.18■□□□□ 0.18
COL7A1-210ENST00000487017 NME6O75414 186 aaPredicted RBP16.17■□□□□ 0.18
COL7A1-210ENST00000487017 LAMP2P13473 410 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 PAQR3Q6TCH7 311 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 GPATCH1Q9BRR8 931 aaKnown RBP16.17■□□□□ 0.18
COL7A1-210ENST00000487017 ATRNL1Q5VV63 1379 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 TOR1BO14657 336 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 CCNFP41002 786 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 ZC3HC1Q86WB0 502 aaKnown RBP16.17■□□□□ 0.18
COL7A1-210ENST00000487017 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.17■□□□□ 0.18
COL7A1-210ENST00000487017 KCNS3Q9BQ31 491 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 BRINP2Q9C0B6 783 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 STX16-NPEPL1H3BU86 382 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 STX16O14662 325 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 PGLSO95336 258 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms