RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 TSPAN6O43657 245 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 MLYCDO95822 493 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 VAC14Q08AM6 782 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 SPIDRQ14159 915 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 CACHD1Q5VU97 1274 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 ADNP2Q6IQ32 1131 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 GDPD4Q6W3E5 623 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 HSD11B1LQ7Z5J1 315 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 HMGN2P46Q86SG4 172 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 TCEAL8Q8IYN2 117 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 NXPE1Q8N323 547 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 SFRP1Q8N474 314 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 ACDQ96AP0 544 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 BAG5Q9UL15 447 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 TBX21Q9UL17 535 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 INVSQ9Y283 1065 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 INSL6Q9Y581 213 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 SNX8Q9Y5X2 465 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 NOBOXO60393 691 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 POP4O95707 220 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 OXTRP30559 389 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 SOX9P48436 509 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 NEDD8Q15843 81 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 GRAMD4Q6IC98 578 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 IRGCQ6NXR0 463 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 SLC43A3Q8NBI5 491 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 OSBPL6Q9BZF3 934 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 CACNA1IQ9P0X4 2223 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 PTGES3LE9PB15 166 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 OTCP00480 354 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 TIMP1P01033 207 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 SPTBP11277 2137 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 GSK3BP49841 420 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 CTSCP53634 463 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 NFKB2Q00653 900 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 SKIV2LQ15477 1246 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 SYT12Q8IV01 421 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 SLC15A3Q8IY34 581 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 ADAMTS19Q8TE59 1207 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 TRMOQ9BU70 441 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 RUBCNLQ9H714 662 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 SPATS2LQ9NUQ6 558 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 MED16Q9Y2X0 877 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 FAM92AA1XBS5 289 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 ZBTB11O95625 1053 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 CLPTM1O96005 669 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 CTSAP10619 480 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 UROSP10746 265 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 PDHA2P29803 388 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 CCR7P32248 378 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 IRX1P78414 480 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 TIAL1Q01085 375 aaKnown RBP eCLIP13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 TLR1Q15399 786 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 GLYATQ6IB77 296 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 SPESP1Q6UW49 350 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 GALNT5Q7Z7M9 940 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 PGBD3Q8N328 593 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 SDCCAG3Q96C92 435 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 FAM120BQ96EK7 910 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 HEPHQ9BQS7 1158 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 PAK6Q9NQU5 681 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 SPHK2Q9NRA0 654 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 COMMD8Q9NX08 183 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 WARS2Q9UGM6 360 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 OGDHLQ9ULD0 1010 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 XYLBO75191 536 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 PCCBP05166 539 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 IDO1P14902 403 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 UQCRBP14927 111 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 CR2P20023 1033 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 OR4D2P58180 307 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 CDKL1Q00532 357 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 SELPLGQ14242 412 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 PIGGQ5H8A4 983 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 TTC33Q6PID6 262 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 RGL4Q8IZJ4 473 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 HS3ST5Q8IZT8 346 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 RNF217Q8TC41 542 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 LRTM1Q9HBL6 345 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 OAZ3Q9UMX2 235 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 ASF1AQ9Y294 204 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 DHRS7Q9Y394 339 aa13.47□□□□□ -0.25
CCDC88A-211ENST00000471947 NINQ8N4C6 2090 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 PDZK1P1A8MUH7 402 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 SLC31A1O15431 190 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 KRT6AP02538 564 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 KRT6BP04259 564 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 ATP5BP06576 529 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 DNAJB1P25685 340 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 KRT6CP48668 564 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 FPGSQ05932 587 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 TPRG1Q6ZUI0 275 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 LARP4Q71RC2 724 aaKnown RBP eCLIP13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 KCNJ9Q92806 393 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 CNOT6Q9ULM6 557 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 PRPF19Q9UMS4 504 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 PIKFYVEQ9Y2I7 2098 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 TRIOO75962 3097 aa13.46□□□□□ -0.25
CCDC88A-211ENST00000471947 TGFB1P01137 390 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms