RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 GDF10P55107 478 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 GSTM4Q03013 218 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 CACNG1Q06432 222 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 RPA4Q13156 261 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 POU6F1Q14863 301 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 ZNF449Q6P9G9 518 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 FBXO38Q6PIJ6 1188 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 TMEM135Q86UB9 458 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 TMEM126BQ8IUX1 230 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 LCN9Q8WX39 176 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 TMEM121Q9BTD3 319 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 MVB12BQ9H7P6 319 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 TP53TG5Q9Y2B4 290 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 SPTAN1Q13813 2472 aaKnown RBP16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 PIKFYVEQ9Y2I7 2098 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 SLC9B1P1A6NJY1 282 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 RFPL1O75677 317 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 AP2A2O94973 939 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 PRSS56P0CW18 603 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 PSMA3P25788 255 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 PTPN4P29074 926 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 PDHA2P29803 388 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 RPS15P62841 145 aaKnown RBP16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 DBN1Q16643 649 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 TCTN3Q6NUS6 607 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 FAM199XQ6PEV8 388 aaPredicted RBP16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 ZNF517Q6ZMY9 492 aaPredicted RBP16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 MICALCLQ6ZW33 695 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 APLFQ8IW19 511 aaPredicted RBP16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 PIANPQ8IYJ0 282 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 CLDN19Q8N6F1 224 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 HES6Q96HZ4 224 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 LRFN5Q96NI6 719 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 ALS2CR12Q96Q35 445 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 RUFY1Q96T51 708 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 TFB2MQ9H5Q4 396 aaKnown RBP16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 FANCEQ9HB96 536 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 SYTL2Q9HCH5 934 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 MAN2B2Q9Y2E5 1009 aa16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 USP9XQ93008 2570 aaPredicted RBP16.1■□□□□ 0.17
CCDC28B-204ENST00000469003 A0A0U1RQJ8 604 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 TCRBV7S2A1N4TA0A589 114 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 GSAPA4D1B5 854 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 MROH6A6NGR9 719 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 BTN3A3O00478 584 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 BTN3A1O00481 513 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 PRDX3P30048 256 aaKnown RBP16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 PREPP48147 710 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 GSDMDP57764 484 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 KLRB1Q12918 225 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 GPS2Q13227 327 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 LAMB3Q13751 1172 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 BOP1Q14137 746 aaKnown RBP16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 ITIH4Q14624 930 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 UGT8Q16880 541 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 SYVN1Q86TM6 617 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 LINC00523Q86TU6 105 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 PHC3Q8NDX5 983 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 OR52E1Q8NGJ3 308 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 TFGQ92734 400 aaPredicted RBP16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 MR1Q95460 341 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 DESI2Q9BSY9 194 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 TLR10Q9BXR5 811 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 PIH1D1Q9NWS0 290 aaKnown RBP16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 SMARCAL1Q9NZC9 954 aa16.09■□□□□ 0.17
CCDC28B-204ENST00000469003 ERI2A8K979 691 aaKnown RBP16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 QSOX1O00391 747 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 LIN7AO14910 233 aaPredicted RBP16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 KLK3P07288 261 aaPredicted RBP16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 MSL3P1P0C860 447 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 MSNP26038 577 aaKnown RBP16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 NSG1P42857 185 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 RPS18P62269 152 aaKnown RBP16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 FOXK1P85037 733 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 SEMA5AQ13591 1074 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 IZUMO3Q5VZ72 239 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 PACS1Q6VY07 963 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 AMIGO1Q86WK6 493 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 DSELQ8IZU8 1212 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 TAB3Q8N5C8 712 aaPredicted RBP16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 SLC38A9Q8NBW4 561 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 THAP4Q8WY91 577 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 CPT1BQ92523 772 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 HGH1Q9BTY7 390 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 PITPNM3Q9BZ71 974 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 IMPACTQ9P2X3 320 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 TLK1Q9UKI8 766 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 FARSAQ9Y285 508 aaKnown RBP16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 CAPN6Q9Y6Q1 641 aa16.08■□□□□ 0.16
CCDC28B-204ENST00000469003 CCDC78A2IDD5 438 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 C2orf74A8MZ97 194 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 TMEM150CB9EJG8 249 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 K7EM74 188 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 MAP3K7O43318 606 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 ST6GAL1P15907 406 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 NR1D1P20393 614 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 STIP1P31948 543 aaKnown RBP16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 FOXN2P32314 431 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 CDH17Q12864 832 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 ABRQ12979 859 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms