RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 FAM90A5PA8MXJ8 464 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 A8MZ25 164 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 GOLGA8NF8WBI6 632 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 STRNO43815 780 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 TMPRSS11DO60235 418 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 SEC31AO94979 1220 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 OAZ2O95190 189 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 CSTAP01040 98 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 PENKP01210 267 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 PCCBP05166 539 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM90A15PP0C7V4 464 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM90A14PP0C7W9 464 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 ODC1P11926 461 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 CALB2P22676 271 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 ADRA1DP25100 572 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 MC5RP33032 325 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 CHRNA7P36544 502 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 MAGEA1P43355 309 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 SLC15A1P46059 708 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 KCNJ4P48050 445 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 PCP4P48539 62 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 PTDSS1P48651 473 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 STAT2P52630 851 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 KRTAP10-7P60409 375 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 ACTR3P61158 418 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 RPS13P62277 151 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 XRCC4Q13426 336 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF273Q14593 569 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 LPIN1Q14693 890 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 WDR43Q15061 677 aaKnown RBP eCLIP4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 TWIST1Q15672 202 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 CEBPEQ15744 281 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 PCGF3Q3KNV8 242 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 FASTKD1Q53R41 847 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 C10orf120Q5SQS8 335 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 LIPMQ5VYY2 423 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 PLA2G4FQ68DD2 849 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 MOXD1Q6UVY6 613 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF704Q6ZNC4 412 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 C15orf39Q6ZRI6 1047 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 COLCA1Q6ZS62 124 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 PIK3AP1Q6ZUJ8 805 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 TPRA1Q86W33 373 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM185AQ8N0U4 392 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 CSGALNACT2Q8N6G5 542 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 C11orf44Q8N8P7 122 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 IQUBQ8NA54 791 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 NHLRC2Q8NBF2 726 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 BBS1Q8NFJ9 593 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 STEAP2Q8NFT2 490 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 POMGNT1Q8WZA1 660 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 KIFAP3Q92845 792 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM149B1Q96BN6 582 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 PTERQ96BW5 349 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 SLC41A2Q96JW4 573 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 RPGRIP1Q96KN7 1286 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 MARK4Q96L34 752 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 SPATA13Q96N96 652 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 RPRD1AQ96P16 312 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 CCT7Q99832 543 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 TMEM117Q9H0C3 514 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 RHBGQ9H310 441 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 P4HTMQ9NXG6 502 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 THEGQ9P2T0 379 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 DKK4Q9UBT3 224 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 KCND3Q9UK17 655 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 KIAA1257Q9ULG3 409 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 CA14Q9ULX7 337 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 MAB21L2Q9Y586 359 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 LIPGQ9Y5X9 500 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 HS3ST3B1Q9Y662 390 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 A0A075B6Q4 140 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 A0A1B0GTQ1 180 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 LOC102723971A0A1B0GUV8 181 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM237BA0A1B0GVD1 139 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 OR2A25A4D2G3 310 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 OOEPA6NGQ2 149 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 B4DGG1 531 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 CCDC188H7C350 402 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 CLIC1O00299 241 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 PEX12O00623 359 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 CLDN3O15551 220 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 SEPT4O43236 478 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 TULP3O75386 442 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 TADA2AO75478 443 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 SEC14L2O76054 403 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 NTSR2O95665 410 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 IGHEP01854 428 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 FHP07954 510 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 CTSAP10619 480 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 PKMP14618 531 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 KLRK1P26718 216 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 SERPINA4P29622 427 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 TRIM23P36406 574 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 PBX3P40426 434 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 SLC11A1P49279 550 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 THBS3P49746 956 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 GATMP50440 423 aa4.76□□□□□ -1.65
CCDC88A-210ENST00000468534 CCR3P51677 355 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms