RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 PRKG2Q13237 762 aa17.04■□□□□ 0.32
COL7A1-206ENST00000466591 LAMB3Q13751 1172 aa17.04■□□□□ 0.32
COL7A1-206ENST00000466591 CAPRIN2Q6IMN6 1127 aaKnown RBP17.04■□□□□ 0.32
COL7A1-206ENST00000466591 FAM199XQ6PEV8 388 aaPredicted RBP17.04■□□□□ 0.32
COL7A1-206ENST00000466591 FBXO38Q6PIJ6 1188 aa17.04■□□□□ 0.32
COL7A1-206ENST00000466591 AMIGO1Q86WK6 493 aa17.04■□□□□ 0.32
COL7A1-206ENST00000466591 ELMO1Q92556 727 aa17.04■□□□□ 0.32
COL7A1-206ENST00000466591 TFGQ92734 400 aaPredicted RBP17.04■□□□□ 0.32
COL7A1-206ENST00000466591 ACSS2Q9NR19 701 aa17.04■□□□□ 0.32
COL7A1-206ENST00000466591 C1GALT1Q9NS00 363 aa17.04■□□□□ 0.32
COL7A1-206ENST00000466591 SEMA5BQ9P283 1151 aa17.04■□□□□ 0.32
COL7A1-206ENST00000466591 SERTAD3Q9UJW9 196 aa17.04■□□□□ 0.32
COL7A1-206ENST00000466591 ZNF148Q9UQR1 794 aa17.04■□□□□ 0.32
COL7A1-206ENST00000466591 PCDHGA6Q9Y5G7 932 aa17.04■□□□□ 0.32
COL7A1-206ENST00000466591 TMEM150CB9EJG8 249 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 AP2A2O94973 939 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 METTL18O95568 372 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 AP2A1O95782 977 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 OR56A5P0C7T3 313 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 PTPN4P29074 926 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 NSG1P42857 185 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 CD151P48509 253 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 CDKN1CP49918 316 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-206ENST00000466591 RPA4Q13156 261 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 BOP1Q14137 746 aaKnown RBP17.03■□□□□ 0.32
COL7A1-206ENST00000466591 BRD3Q15059 726 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 DENND5AQ6IQ26 1287 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 ASB18Q6ZVZ8 466 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 SYVN1Q86TM6 617 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 GPR135Q8IZ08 494 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 CLDN19Q8N6F1 224 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 CCDC89Q8N998 374 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 PHC3Q8NDX5 983 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 OR52E1Q8NGJ3 308 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 THAP4Q8WY91 577 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 CDKN2AIPNLQ96HQ2 116 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 TSSK1BQ9BXA7 367 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 TSGA10Q9BZW7 698 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 SYTL2Q9HCH5 934 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 POMT2Q9UKY4 750 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 SNX7Q9UNH6 387 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 ASF1AQ9Y294 204 aa17.03■□□□□ 0.32
COL7A1-206ENST00000466591 TDRKHQ9Y2W6 561 aaKnown RBP17.03■□□□□ 0.32
COL7A1-206ENST00000466591 AGAP14A8MT82 685 aa17.02■□□□□ 0.32
COL7A1-206ENST00000466591 ATXN8OSP0DMR3 200 aa17.02■□□□□ 0.32
COL7A1-206ENST00000466591 PPARGP37231 505 aaPredicted RBP17.02■□□□□ 0.32
COL7A1-206ENST00000466591 PMS2P54278 862 aa17.02■□□□□ 0.32
COL7A1-206ENST00000466591 RPS18P62269 152 aaKnown RBP17.02■□□□□ 0.32
COL7A1-206ENST00000466591 CDH17Q12864 832 aa17.02■□□□□ 0.32
COL7A1-206ENST00000466591 CCDC38Q502W7 563 aa17.02■□□□□ 0.32
COL7A1-206ENST00000466591 TMEM135Q86UB9 458 aa17.02■□□□□ 0.32
COL7A1-206ENST00000466591 ATCAYQ86WG3 371 aa17.02■□□□□ 0.32
COL7A1-206ENST00000466591 ZNF501Q96CX3 271 aaPredicted RBP17.02■□□□□ 0.32
COL7A1-206ENST00000466591 KLHL25Q9H0H3 589 aa17.02■□□□□ 0.32
COL7A1-206ENST00000466591 ACTR5Q9H9F9 607 aaPredicted RBP17.02■□□□□ 0.32
COL7A1-206ENST00000466591 IMPACTQ9P2X3 320 aa17.02■□□□□ 0.32
COL7A1-206ENST00000466591 ANAPC5Q9UJX4 755 aa17.02■□□□□ 0.32
COL7A1-206ENST00000466591 FARSAQ9Y285 508 aaKnown RBP17.02■□□□□ 0.32
COL7A1-206ENST00000466591 BTRCQ9Y297 605 aa17.02■□□□□ 0.32
COL7A1-206ENST00000466591 HEATR9A2RTY3 570 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 ARGFXA6NJG6 315 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 ERI2A8K979 691 aaKnown RBP17.01■□□□□ 0.31
COL7A1-206ENST00000466591 C9J4A7 227 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 E7EQ34 232 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 H7C0S8 307 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 BTN3A1O00481 513 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 LIN7AO14910 233 aaPredicted RBP17.01■□□□□ 0.31
COL7A1-206ENST00000466591 SGTAO43765 313 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 FURINP09958 794 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 PRSS56P0CW18 603 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 AGXTP21549 392 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 PDHA2P29803 388 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 PRDX3P30048 256 aaKnown RBP17.01■□□□□ 0.31
COL7A1-206ENST00000466591 STIP1P31948 543 aaKnown RBP17.01■□□□□ 0.31
COL7A1-206ENST00000466591 SHMT2P34897 504 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 GDF10P55107 478 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 PRAMEP78395 509 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 DBN1Q16643 649 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 UGT8Q16880 541 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 COLEC12Q5KU26 742 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 LYPLAL1Q5VWZ2 237 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 OR52K1Q8NGK4 314 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 OR6P1Q8NGX9 317 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 GSDMBQ8TAX9 411 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 ATG4AQ8WYN0 398 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 PPM1MQ96MI6 270 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 CHST8Q9H2A9 424 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 OR52A5Q9H2C5 316 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 XKR8Q9H6D3 395 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 LATS2Q9NRM7 1088 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 ACTR10Q9NZ32 417 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 TLK1Q9UKI8 766 aa17.01■□□□□ 0.31
COL7A1-206ENST00000466591 R3HDM2Q9Y2K5 976 aaKnown RBP17.01■□□□□ 0.31
COL7A1-206ENST00000466591 IGLV3-16A0A075B6K0 115 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 MEN1O00255 615 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 KRT86O43790 486 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 RECKO95980 971 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 HBQ1P09105 142 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 NR1D1P20393 614 aa17■□□□□ 0.31
COL7A1-206ENST00000466591 FDFT1P37268 417 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms