RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 ZNF534Q76KX8 674 aa20.64■□□□□ 0.89
HMGB3-205ENST00000455596 BPHLQ86WA6 291 aaPredicted RBP20.64■□□□□ 0.89
HMGB3-205ENST00000455596 UNC5BQ8IZJ1 945 aa20.64■□□□□ 0.89
HMGB3-205ENST00000455596 PRELID2Q8N945 189 aa20.64■□□□□ 0.89
HMGB3-205ENST00000455596 OR52E1Q8NGJ3 308 aa20.64■□□□□ 0.89
HMGB3-205ENST00000455596 STAMBPL1Q96FJ0 436 aa20.64■□□□□ 0.89
HMGB3-205ENST00000455596 SLC45A3Q96JT2 553 aa20.64■□□□□ 0.89
HMGB3-205ENST00000455596 IL22Q9GZX6 179 aa20.64■□□□□ 0.89
HMGB3-205ENST00000455596 TFB2MQ9H5Q4 396 aaKnown RBP20.64■□□□□ 0.89
HMGB3-205ENST00000455596 BFARQ9NZS9 450 aa20.64■□□□□ 0.89
HMGB3-205ENST00000455596 GOLGA6L3A6NEY3 463 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 EBLN1P0CF75 366 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 CDK16Q00536 496 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 PLOD1Q02809 727 aaPredicted RBP20.63■□□□□ 0.89
HMGB3-205ENST00000455596 BOP1Q14137 746 aaKnown RBP20.63■□□□□ 0.89
HMGB3-205ENST00000455596 TBR1Q16650 682 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 SYTL3Q4VX76 610 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 AARS2Q5JTZ9 985 aaKnown RBP20.63■□□□□ 0.89
HMGB3-205ENST00000455596 RASGEF1CQ8N431 466 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 D2HGDHQ8N465 521 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 GALNT6Q8NCL4 622 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 RNF31Q96EP0 1072 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 PBKQ96KB5 322 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 FCRL4Q96PJ5 515 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 HGH1Q9BTY7 390 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 FGF21Q9NSA1 209 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 CATSPERZQ9NTU4 200 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 LNPEPQ9UIQ6 1025 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 POMT2Q9UKY4 750 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 RPS6KL1Q9Y6S9 549 aa20.63■□□□□ 0.89
HMGB3-205ENST00000455596 SLC5A10A0PJK1 596 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 GSAPA4D1B5 854 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 MT-ND3P03897 115 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 TPSB2P20231 275 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 CDH3P22223 829 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 CRADDP78560 199 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 PRKG2Q13237 762 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 SEMA3AQ14563 771 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 TPSAB1Q15661 275 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 TMTC4Q5T4D3 741 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 TSSK1BQ9BXA7 367 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 C1GALT1Q9NS00 363 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 SOHLH2Q9NX45 425 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 TTC7AQ9ULT0 858 aaPredicted RBP20.62■□□□□ 0.89
HMGB3-205ENST00000455596 ASF1AQ9Y294 204 aa20.62■□□□□ 0.89
HMGB3-205ENST00000455596 BTN3A3O00478 584 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 BTN3A1O00481 513 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 CCNYL3P0C7X3 344 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 ACADLP28330 430 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 TTPAP49638 278 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 TRIP13Q15645 432 aaPredicted RBP20.61■□□□□ 0.89
HMGB3-205ENST00000455596 LRRC8BQ6P9F7 803 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 NAPRTQ6XQN6 538 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 AMIGO1Q86WK6 493 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 EXD3Q8N9H8 876 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 OR5AR1Q8NGP9 310 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 PPM1MQ96MI6 270 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 CATSPER2Q96P56 530 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 TREX1Q9NSU2 369 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 IL17BQ9UHF5 180 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 BTRCQ9Y297 605 aa20.61■□□□□ 0.89
HMGB3-205ENST00000455596 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.6■□□□□ 0.89
HMGB3-205ENST00000455596 C2orf74A8MZ97 194 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 CD3EAPO15446 510 aaKnown RBP20.6■□□□□ 0.89
HMGB3-205ENST00000455596 TIAF1O95411 115 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 ITGB6P18564 788 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 MGAT1P26572 445 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 NMBRP28336 390 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 PRDX3P30048 256 aaKnown RBP20.6■□□□□ 0.89
HMGB3-205ENST00000455596 DLSTP36957 453 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 VPS41P49754 854 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 TUBB4BP68371 445 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 SARNPP82979 210 aaKnown RBP20.6■□□□□ 0.89
HMGB3-205ENST00000455596 MC1RQ01726 317 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 TUBB2AQ13885 445 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 PWWP2BQ6NUJ5 590 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 FBXO38Q6PIJ6 1188 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 REXO1L1PQ8IX06 675 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 TBC1D21Q8IYX1 336 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 STARD8Q92502 1023 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 MAGOHBQ96A72 148 aaKnown RBP20.6■□□□□ 0.89
HMGB3-205ENST00000455596 MS4A14Q96JA4 679 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 NAP1L3Q99457 506 aaPredicted RBP20.6■□□□□ 0.89
HMGB3-205ENST00000455596 TUBB2BQ9BVA1 445 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 CARD6Q9BX69 1037 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 XKR8Q9H6D3 395 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 MRM3Q9HC36 420 aaKnown RBP20.6■□□□□ 0.89
HMGB3-205ENST00000455596 POLG2Q9UHN1 485 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 CROTQ9UKG9 612 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 COL6A6A6NMZ7 2263 aa20.6■□□□□ 0.89
HMGB3-205ENST00000455596 ATMQ13315 3056 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 SNRNP200O75643 2136 aaKnown RBP20.59■□□□□ 0.89
HMGB3-205ENST00000455596 TCRBV7S3A2A0A539 114 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 SLC9B1P1A6NJY1 282 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 BHMG1C9JSJ3 638 aaPredicted RBP20.59■□□□□ 0.89
HMGB3-205ENST00000455596 NKX2-8O15522 239 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 ZSCAN12O43309 604 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 KRT14P02533 472 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 FAM87AP0C7U9 286 aa20.59■□□□□ 0.89
HMGB3-205ENST00000455596 SFTPCP11686 197 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms