RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 IL15P40933 162 aaPredicted RBP4.09□□□□□ -1.75
VPS29-202ENST00000447578 MMP14P50281 582 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 ARSEP51690 589 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 TIMM10P62072 90 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 UBE2HP62256 183 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 NEDD9Q14511 834 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 HYAL4Q2M3T9 481 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 CCDC57Q2TAC2 916 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 DHRS7BQ6IAN0 325 aaPredicted RBP4.09□□□□□ -1.75
VPS29-202ENST00000447578 CAPRIN2Q6IMN6 1127 aaKnown RBP4.09□□□□□ -1.75
VPS29-202ENST00000447578 IYDQ6PHW0 289 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 KIF6Q6ZMV9 814 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 PQLC2Q6ZP29 291 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 ATG9AQ7Z3C6 839 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 SDCCAG8Q86SQ7 713 aaPredicted RBP4.09□□□□□ -1.75
VPS29-202ENST00000447578 DDIASQ8IXT1 998 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 RBFAQ8N0V3 343 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 KBTBD3Q8NAB2 608 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 SCCPDHQ8NBX0 429 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 CAMKVQ8NCB2 501 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 RBM15BQ8NDT2 890 aaKnown RBP4.09□□□□□ -1.75
VPS29-202ENST00000447578 MGARPQ8TDB4 240 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 KCNE4Q8WWG9 221 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 LINC00615Q96LM1 132 aaPredicted RBP4.09□□□□□ -1.75
VPS29-202ENST00000447578 CCDC114Q96M63 670 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 ACOX2Q99424 681 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 SLC25A23Q9BV35 468 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 PUS3Q9BZE2 481 aaKnown RBP4.09□□□□□ -1.75
VPS29-202ENST00000447578 B3GNT4Q9C0J1 378 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 GPR88Q9GZN0 384 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 SPATC1LQ9H0A9 340 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 KCNK15Q9H427 330 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 DNAJC18Q9H819 358 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 EPB41L5Q9HCM4 733 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 SPAG4Q9NPE6 437 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 FZD3Q9NPG1 666 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 MBNL1Q9NR56 388 aaKnown RBP4.09□□□□□ -1.75
VPS29-202ENST00000447578 CYSLTR2Q9NS75 346 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 OLAHQ9NV23 265 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 TMOD3Q9NYL9 352 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 CISD1Q9NZ45 108 aaKnown RBP4.09□□□□□ -1.75
VPS29-202ENST00000447578 COQ3Q9NZJ6 369 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 DNAJB4Q9UDY4 337 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 FBXW11Q9UKB1 542 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 PCDHA7Q9UN72 937 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 POMT1Q9Y6A1 747 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 ZNF335Q9H4Z2 1342 aaPredicted RBP4.09□□□□□ -1.75
VPS29-202ENST00000447578 RFX7Q2KHR2 1363 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 JCADQ9P266 1359 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 ZNF609O15014 1411 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 STRCP1A6NGW2 1772 aa4.09□□□□□ -1.76
VPS29-202ENST00000447578 RGPD5Q99666 1765 aa4.09□□□□□ -1.76
VPS29-202ENST00000447578 SCN11AQ9UI33 1791 aa4.09□□□□□ -1.76
VPS29-202ENST00000447578 CPED1A4D0V7 1026 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 H0YAE9 185 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 H0YIN7 160 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 STMND1H3BQB6 276 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 KRT86O43790 486 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 JAK2O60674 1132 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 CACNA1FO60840 1977 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 CIAO1O76071 339 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 SLCO2B1O94956 709 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 GOSR1O95249 250 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 PENKP01210 267 aaPredicted RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 PTMAP06454 111 aaKnown RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 MYZAPP0CAP1 466 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 GLI3P10071 1580 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 ADORA1P30542 326 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 NPY4RP50391 375 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 BMXP51813 675 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 CAPZA1P52907 286 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 PPP2R2BQ00005 443 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 YWHAHQ04917 246 aaPredicted RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 FAM27E3Q08E93 113 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 GRIK2Q13002 908 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 NFE2L1Q14494 772 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 KRT81Q14533 505 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 NFATC4Q14934 902 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 MMEL1Q495T6 779 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 CCDC158Q5M9N0 1113 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 PIK3CD-AS1Q5SR53 167 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 TNS2Q63HR2 1409 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 PLEKHA7Q6IQ23 1121 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 HEPHL1Q6MZM0 1159 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 METTL2BQ6P1Q9 378 aaKnown RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 FAM173BQ6P4H8 233 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 KCPQ6ZWJ8 1503 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 RAPH1Q70E73 1250 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 DPPA4Q7L190 304 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 TRAPPC11Q7Z392 1133 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 PKD1L3Q7Z443 1732 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 LDB1Q86U70 411 aaPredicted RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 NR2C2APQ86WQ0 139 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 CAMK1DQ8IU85 385 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 SPATA2LQ8IUW3 424 aaPredicted RBP4.08□□□□□ -1.76
VPS29-202ENST00000447578 SIX6OS1Q8N1H7 587 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 IQCF1Q8N6M8 205 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 IQUBQ8NA54 791 aa4.08□□□□□ -1.76
VPS29-202ENST00000447578 FAM184AQ8NB25 1140 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms