RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 FDXRP22570 491 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 ATP5DP30049 168 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 STX2P32856 288 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 GPR3P46089 330 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 CSRP3P50461 194 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 PGGT1BP53609 377 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 OR1D5P58170 312 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 HHEXQ03014 270 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 HSPA14Q0VDF9 509 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 BRD3Q15059 726 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 ACSBG2Q5FVE4 666 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 HECTD2Q5U5R9 776 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 TMEM207Q6UWW9 146 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 THSD4Q6ZMP0 1018 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 TMEM26Q6ZUK4 368 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 TRMT10CQ7L0Y3 403 aaKnown RBP12.12□□□□□ -0.47
USP40-205ENST00000430158 RAB44Q7Z6P3 723 aaPredicted RBP12.12□□□□□ -0.47
USP40-205ENST00000430158 SLC9B2Q86UD5 537 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 SIDT2Q8NBJ9 832 aaKnown RBP12.12□□□□□ -0.47
USP40-205ENST00000430158 GABPB2Q8TAK5 448 aaPredicted RBP12.12□□□□□ -0.47
USP40-205ENST00000430158 ADAMTS14Q8WXS8 1223 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 FAM136AQ96C01 138 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 GPR21Q99679 349 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 CPNE1Q99829 537 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 POT1Q9NUX5 634 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 NSMCE4AQ9NXX6 385 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 OGFRQ9NZT2 677 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 RAB21Q9UL25 225 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 CORO1CQ9ULV4 474 aaPredicted RBP12.12□□□□□ -0.47
USP40-205ENST00000430158 VWA7Q9Y334 891 aa12.12□□□□□ -0.47
USP40-205ENST00000430158 CFAP20Q9Y6A4 193 aaKnown RBP12.12□□□□□ -0.47
USP40-205ENST00000430158 IGHV1OR21-1A0A087WYE8 117 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 LILRA5A6NI73 299 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 KPNA5O15131 536 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 RIPK2O43353 540 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 MATN4O95460 622 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 ACSL3O95573 720 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 APOA4P06727 396 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 SLC35G4P0C7Q5 338 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 CHRM3P20309 590 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 GCAP28676 217 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 CD1CP29017 333 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 GP5P40197 560 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 PMS2P54278 862 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 CSE1LP55060 971 aaKnown RBP12.11□□□□□ -0.47
USP40-205ENST00000430158 TAS2R39P59534 338 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 CCL7P80098 99 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 INSM1Q01101 510 aaPredicted RBP12.11□□□□□ -0.47
USP40-205ENST00000430158 NAB1Q13506 487 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 GPR18Q14330 331 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 GRB7Q14451 532 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 UAP1Q16222 522 aaPredicted RBP12.11□□□□□ -0.47
USP40-205ENST00000430158 OTOAQ7RTW8 1153 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 TMPRSS9Q7Z410 1059 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 PIM3Q86V86 326 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 ZNF761Q86XN6 746 aaPredicted RBP12.11□□□□□ -0.47
USP40-205ENST00000430158 ZBTB2Q8N680 514 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 AVL9Q8NBF6 648 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 PHC3Q8NDX5 983 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 AENQ8WTP8 325 aaKnown RBP12.11□□□□□ -0.47
USP40-205ENST00000430158 ZFPM2Q8WW38 1151 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 TFGQ92734 400 aaPredicted RBP12.11□□□□□ -0.47
USP40-205ENST00000430158 INPP5DQ92835 1189 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 TMEM159Q96B96 161 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 VPS39Q96JC1 886 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 C12orf66Q96MD2 445 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 GPR22Q99680 433 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 RBBP8Q99708 897 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 NRTNQ99748 197 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 CCDC3Q9BQI4 270 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 DHRS4Q9BTZ2 278 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 TSSK1BQ9BXA7 367 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 PARD6BQ9BYG5 372 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 KIR3DX1Q9H7L2 352 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 SLC24A2Q9UI40 661 aa12.11□□□□□ -0.47
USP40-205ENST00000430158 APOBEC2Q9Y235 224 aaKnown RBP12.11□□□□□ -0.47
USP40-205ENST00000430158 MTO1Q9Y2Z2 717 aaKnown RBP12.11□□□□□ -0.47
USP40-205ENST00000430158 HEATR5BQ9P2D3 2071 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 APC2O95996 2303 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 RHPN2P1A8MT19 583 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 VIPP01282 170 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 CDK4P11802 303 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 HALP42357 657 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 PDX1P52945 283 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 LIMK2P53671 638 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 EPHA4P54764 986 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 CLDN6P56747 220 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 E2F1Q01094 437 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 FAM45BPQ6NSW5 357 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 PAQR3Q6TCH7 311 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 DHRS13Q6UX07 377 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 ZNF574Q6ZN55 896 aaPredicted RBP12.1□□□□□ -0.47
USP40-205ENST00000430158 NEK10Q6ZWH5 1172 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 CEP97Q8IW35 865 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 RBM12BQ8IXT5 1001 aaKnown RBP12.1□□□□□ -0.47
USP40-205ENST00000430158 CACTIN-AS1Q8N1I8 211 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 PPM1NQ8N819 430 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 OR5AR1Q8NGP9 310 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 FAM45AQ8TCE6 357 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 SLC44A1Q8WWI5 657 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms