RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 ALAS2P22557 587 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 ITGB7P26010 798 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 CBSP35520 551 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 CYP4F2P78329 520 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 TMEM115Q12893 351 aaPredicted RBP12.7□□□□□ -0.38
PTCH1-207ENST00000429896 TBCDQ9BTW9 1192 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 PRKAB1Q9Y478 270 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 LBPP18428 481 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 HLA-FP30511 346 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 PXNP49023 591 aaPredicted RBP12.7□□□□□ -0.38
PTCH1-207ENST00000429896 C10orf107Q8IVU9 208 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 GLIS1Q8NBF1 620 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 SH3GL1Q99961 368 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 ACTL7AQ9Y615 435 aa12.7□□□□□ -0.38
PTCH1-207ENST00000429896 TRAFD1O14545 582 aaPredicted RBP12.69□□□□□ -0.38
PTCH1-207ENST00000429896 OR10H2O60403 315 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 RABIFP47224 123 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 DEFA1P59665 94 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 DEFA3P59666 94 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 NIPAL4Q0D2K0 466 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 ATAD3BQ5T9A4 648 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 PARGQ86W56 976 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 NXPE1Q8N323 547 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 DNAJC5GQ8N7S2 189 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 ZFP28Q8NHY6 868 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 WDR36Q8NI36 951 aaKnown RBP12.69□□□□□ -0.38
PTCH1-207ENST00000429896 USP7Q93009 1102 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 SCAMP4Q969E2 229 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 MGME1Q9BQP7 344 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 NIPSNAP2O75323 286 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 CHRNB3Q05901 458 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 MAPK11Q15759 364 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 HSF5Q4G112 596 aaPredicted RBP12.69□□□□□ -0.38
PTCH1-207ENST00000429896 PPM1JQ5JR12 505 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 TRMT10BQ6PF06 316 aaKnown RBP12.69□□□□□ -0.38
PTCH1-207ENST00000429896 TRIM74Q86UV6 250 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 TRABD2AQ86V40 505 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 CYP4Z1Q86W10 505 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 TP53INP2Q8IXH6 220 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 GJD3Q8N144 294 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 HM13Q8TCT9 377 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 ZSWIM3Q96MP5 696 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 EFCAB1Q9HAE3 211 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 FZD3Q9NPG1 666 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 AZIN1O14977 448 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 TP73O15350 636 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 RPL3P39023 403 aaKnown RBP12.69□□□□□ -0.38
PTCH1-207ENST00000429896 DPP6P42658 865 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 Q8N9G6 341 aaPredicted RBP12.69□□□□□ -0.38
PTCH1-207ENST00000429896 GLYATL1Q969I3 302 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 SPATA2Q9UM82 520 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 CACNG3O60359 315 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 LYSMD4Q5XG99 296 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 NMD3Q96D46 503 aaKnown RBP12.69□□□□□ -0.38
PTCH1-207ENST00000429896 OLFM1Q99784 485 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 C2CD4DB7Z1M9 353 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 PSMB9P28065 219 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 SOX6P35712 828 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 LPAL2Q16609 132 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 NAPRTQ6XQN6 538 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 OR2T34Q8NGX1 318 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 TOE1Q96GM8 510 aaKnown RBP12.69□□□□□ -0.38
PTCH1-207ENST00000429896 SEMA6AQ9H2E6 1030 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 GPR34Q9UPC5 381 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 BTRCQ9Y297 605 aa12.69□□□□□ -0.38
PTCH1-207ENST00000429896 RGSL1A5PLK6 1076 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 IQCF5A8MTL0 148 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 SLC35G6P0C7Q6 338 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 RPL10P27635 214 aaKnown RBP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 NUDT1P36639 197 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 ZNF460Q14592 562 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 ATP13A5Q4VNC0 1218 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 PHF19Q5T6S3 580 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 UBALD2Q8IYN6 164 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 FAM120BQ96EK7 910 aaKnown RBP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 GFRA2O00451 464 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 SMAD6O43541 496 aaKnown RBP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 PI15O43692 258 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 PEX1O43933 1283 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 HNRNPLP14866 589 aaKnown RBP eCLIP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 JUNDP17535 347 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 CD6P30203 668 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 S100A3P33764 101 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 SSR2P43308 183 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 HSPA7P48741 367 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 SRSF11Q05519 484 aaKnown RBP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 TAF13Q15543 124 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 CCDC92Q53HC0 331 aaPredicted RBP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 GPR141Q7Z602 305 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 IZUMO1Q8IYV9 350 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 CLYBLQ8N0X4 340 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 ARFGAP1Q8N6T3 406 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 RANBP9Q96S59 729 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 TRMOQ9BU70 441 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 CPEB1Q9BZB8 566 aaKnown RBP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 PAIP2BQ9ULR5 123 aaKnown RBP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 CCDC154A6NI56 674 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 HNRNPRO43390 633 aaKnown RBP12.68□□□□□ -0.38
PTCH1-207ENST00000429896 CLDN9O95484 217 aa12.68□□□□□ -0.38
PTCH1-207ENST00000429896 HNRNPA2B1P22626 353 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms