RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 NME1P15531 152 aaKnown RBP9□□□□□ -0.97
UPF2-202ENST00000357604 IGFALSP35858 605 aa9□□□□□ -0.97
UPF2-202ENST00000357604 GPR3P46089 330 aa9□□□□□ -0.97
UPF2-202ENST00000357604 RAB15P59190 212 aa9□□□□□ -0.97
UPF2-202ENST00000357604 RPP38P78345 283 aaKnown RBP9□□□□□ -0.97
UPF2-202ENST00000357604 TCTE1Q5JU00 501 aa9□□□□□ -0.97
UPF2-202ENST00000357604 HENMT1Q5T8I9 393 aaKnown RBP9□□□□□ -0.97
UPF2-202ENST00000357604 DCLK2Q8N568 766 aa9□□□□□ -0.97
UPF2-202ENST00000357604 NOA1Q8NC60 698 aaKnown RBP9□□□□□ -0.97
UPF2-202ENST00000357604 OR8K5Q8NH50 307 aa9□□□□□ -0.97
UPF2-202ENST00000357604 ARHGAP9Q9BRR9 750 aa9□□□□□ -0.97
UPF2-202ENST00000357604 HRASLS2Q9NWW9 162 aa9□□□□□ -0.97
UPF2-202ENST00000357604 PCDHB3Q9Y5E6 796 aa9□□□□□ -0.97
UPF2-202ENST00000357604 SLC28A1O00337 649 aa9□□□□□ -0.97
UPF2-202ENST00000357604 COX7A2P14406 83 aa9□□□□□ -0.97
UPF2-202ENST00000357604 TNNI3P19429 210 aa9□□□□□ -0.97
UPF2-202ENST00000357604 EPHA8P29322 1005 aaPredicted RBP9□□□□□ -0.97
UPF2-202ENST00000357604 HSD17B3P37058 310 aa9□□□□□ -0.97
UPF2-202ENST00000357604 PTSQ03393 145 aa9□□□□□ -0.97
UPF2-202ENST00000357604 EIF3IQ13347 325 aaKnown RBP9□□□□□ -0.97
UPF2-202ENST00000357604 ENPP2Q13822 863 aa9□□□□□ -0.97
UPF2-202ENST00000357604 C6orf132Q5T0Z8 1188 aa9□□□□□ -0.97
UPF2-202ENST00000357604 DGLUCYQ7Z3D6 616 aa9□□□□□ -0.97
UPF2-202ENST00000357604 TP53I13Q8NBR0 393 aaPredicted RBP9□□□□□ -0.97
UPF2-202ENST00000357604 GPR26Q8NDV2 337 aa9□□□□□ -0.97
UPF2-202ENST00000357604 COL26A1Q96A83 441 aa9□□□□□ -0.97
UPF2-202ENST00000357604 MFSD3Q96ES6 412 aa9□□□□□ -0.97
UPF2-202ENST00000357604 MRPL46Q9H2W6 279 aaKnown RBP9□□□□□ -0.97
UPF2-202ENST00000357604 COG4Q9H9E3 785 aa9□□□□□ -0.97
UPF2-202ENST00000357604 SPTY2D1-AS1A0A0U1RR47 76 aa9□□□□□ -0.97
UPF2-202ENST00000357604 TCRBV9S1A1TA0A576 114 aa9□□□□□ -0.97
UPF2-202ENST00000357604 SCAMP1O15126 338 aa9□□□□□ -0.97
UPF2-202ENST00000357604 ZNF883P0CG24 379 aa9□□□□□ -0.97
UPF2-202ENST00000357604 LEPRP48357 1165 aaKnown RBP9□□□□□ -0.97
UPF2-202ENST00000357604 CTBSQ01459 385 aa9□□□□□ -0.97
UPF2-202ENST00000357604 TRA2AQ13595 282 aaKnown RBP eCLIP9□□□□□ -0.975e-29■■■■■ 35.2
UPF2-202ENST00000357604 CASP8Q14790 479 aa9□□□□□ -0.97
UPF2-202ENST00000357604 KIR2DS3Q14952 304 aa9□□□□□ -0.97
UPF2-202ENST00000357604 KIF19Q2TAC6 998 aa9□□□□□ -0.97
UPF2-202ENST00000357604 SPDYE7PQ495Y7 208 aa9□□□□□ -0.97
UPF2-202ENST00000357604 ZNF542PQ5EBM4 170 aa9□□□□□ -0.97
UPF2-202ENST00000357604 HLA-DQA1Q5Y7H0 255 aa9□□□□□ -0.97
UPF2-202ENST00000357604 CEACAM20Q6UY09 585 aa9□□□□□ -0.97
UPF2-202ENST00000357604 KRT222Q8N1A0 295 aa9□□□□□ -0.97
UPF2-202ENST00000357604 VPS37AQ8NEZ2 397 aa9□□□□□ -0.97
UPF2-202ENST00000357604 RGS14O43566 566 aa9□□□□□ -0.97
UPF2-202ENST00000357604 EIF2S1P05198 315 aaKnown RBP9□□□□□ -0.97
UPF2-202ENST00000357604 RPLP0P05388 317 aaKnown RBP9□□□□□ -0.97
UPF2-202ENST00000357604 SERPINB5P36952 375 aa9□□□□□ -0.97
UPF2-202ENST00000357604 MPP1Q00013 466 aa9□□□□□ -0.97
UPF2-202ENST00000357604 MAPRE2Q15555 327 aa9□□□□□ -0.97
UPF2-202ENST00000357604 KBTBD12Q3ZCT8 623 aa9□□□□□ -0.97
UPF2-202ENST00000357604 PRAMEF14Q5SWL7 426 aa9□□□□□ -0.97
UPF2-202ENST00000357604 TEDDM1Q5T9Z0 273 aa9□□□□□ -0.97
UPF2-202ENST00000357604 PRAMEF13Q5VWM6 474 aa9□□□□□ -0.97
UPF2-202ENST00000357604 CYP4V2Q6ZWL3 525 aaPredicted RBP9□□□□□ -0.97
UPF2-202ENST00000357604 TRIM74Q86UV6 250 aa9□□□□□ -0.97
UPF2-202ENST00000357604 GSPT2Q8IYD1 628 aaKnown RBP9□□□□□ -0.97
UPF2-202ENST00000357604 CNTD1Q8N815 330 aa9□□□□□ -0.97
UPF2-202ENST00000357604 ARL8AQ96BM9 186 aa9□□□□□ -0.97
UPF2-202ENST00000357604 ALG9Q9H6U8 611 aa9□□□□□ -0.97
UPF2-202ENST00000357604 PILRBQ9UKJ0 227 aa9□□□□□ -0.97
UPF2-202ENST00000357604 OR6C74A6NCV1 312 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 PEX12O00623 359 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 SUPT7LO94864 414 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 ATXN8OSP0DMR3 200 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 ATP5F1P24539 256 aaPredicted RBP8.99□□□□□ -0.97
UPF2-202ENST00000357604 GRK2P25098 689 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 HK2P52789 917 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 ZXDBP98169 803 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 C10orf62Q5T681 223 aaPredicted RBP8.99□□□□□ -0.97
UPF2-202ENST00000357604 ADGRG6Q86SQ4 1221 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 PARP9Q8IXQ6 854 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 ZNF548Q8NEK5 533 aaPredicted RBP8.99□□□□□ -0.97
UPF2-202ENST00000357604 OR4E2Q8NGC2 313 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 FAM86C1Q9NVL1 165 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 OTOL1A6NHN0 477 aaPredicted RBP8.99□□□□□ -0.97
UPF2-202ENST00000357604 TMEM114B3SHH9 223 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 MTX2O75431 263 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 PRLP01236 227 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 CKMT2P17540 419 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 BCKDHBP21953 392 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 KRT20P35900 424 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 STX3Q13277 289 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 RAB43Q86YS6 212 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 TP53INP2Q8IXH6 220 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 SEC14L1Q92503 715 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 DERL2Q9GZP9 239 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 FBRSL1Q9HCM7 1045 aaKnown RBP8.99□□□□□ -0.97
UPF2-202ENST00000357604 CPNE7Q9UBL6 633 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 KCTD3Q9Y597 815 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 SPO11Q9Y5K1 396 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 DGKBQ9Y6T7 804 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 PDHA1P08559 390 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 CPA3P15088 417 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 GSTM2P28161 218 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 SIM1P81133 766 aaPredicted RBP8.99□□□□□ -0.97
UPF2-202ENST00000357604 AP5B1Q2VPB7 878 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 DCAF12Q5T6F0 453 aa8.99□□□□□ -0.97
UPF2-202ENST00000357604 NXPE2Q96DL1 559 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms