RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 LOC285095A0A1B0GVY8 99 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 HEATR9A2RTY3 570 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 FFAR3O14843 346 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 TM9SF1O15321 606 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 SUV39H1O43463 412 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 USP12O75317 370 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 CNTN5O94779 1100 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 CR2P20023 1033 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 CD247P20963 164 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 PSMA3P25788 255 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 CD38P28907 300 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 MDH1P40925 334 aaKnown RBP6.9□□□□□ -1.3
VPS13A-201ENST00000355766 RXRGP48443 463 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 CSNK1DP48730 415 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 POLD2P49005 469 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 AP1S1P61966 158 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 NFKB2Q00653 900 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 PDE1BQ01064 536 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 SULT2A1Q06520 285 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 MGAT5Q09328 741 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 NIPAL4Q0D2K0 466 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 LONRF1Q17RB8 773 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 FNDC3BQ53EP0 1204 aaKnown RBP6.9□□□□□ -1.3
VPS13A-201ENST00000355766 PCID2Q5JVF3 399 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 FAXCQ5TGI0 409 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 FBXW10Q5XX13 1052 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 ZNF776Q68DI1 518 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-201ENST00000355766 PDPK2PQ6A1A2 396 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 BICRALQ6AI39 1079 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 KIAA0930Q6ICG6 404 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-201ENST00000355766 PAQR3Q6TCH7 311 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 KDELC1Q6UW63 502 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 CYP2R1Q6VVX0 501 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 CCDC81Q6ZN84 652 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 TIFABQ6ZNK6 161 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 KIAA0408Q6ZU52 694 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 CNTN4Q8IWV2 1026 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 ZNF366Q8N895 744 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 DNAAF3Q8N9W5 541 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 PPHLN1Q8NEY8 458 aaKnown RBP6.9□□□□□ -1.3
VPS13A-201ENST00000355766 FIBINQ8TAL6 211 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 DCAKDQ8WVC6 231 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 ISG20Q96AZ6 181 aaKnown RBP6.9□□□□□ -1.3
VPS13A-201ENST00000355766 TMA16Q96EY4 203 aaKnown RBP6.9□□□□□ -1.3
VPS13A-201ENST00000355766 SMC6Q96SB8 1091 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 CPNE1Q99829 537 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 CAPS2Q9BXY5 557 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 ERVMER34-1Q9H9K5 563 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 EBF2Q9HAK2 575 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 CLEC4EQ9ULY5 219 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 PLA2G2DQ9UNK4 145 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 PCDHGB7Q9Y5F8 929 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 OR51B4Q9Y5P0 310 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 MAD1L1Q9Y6D9 718 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 FAM169AQ9Y6X4 670 aa6.9□□□□□ -1.3
VPS13A-201ENST00000355766 LRRK2Q5S007 2527 aa6.9□□□□□ -1.31
VPS13A-201ENST00000355766 FLNCQ14315 2725 aa6.9□□□□□ -1.31
VPS13A-201ENST00000355766 BOD1L1Q8NFC6 3051 aa6.9□□□□□ -1.31
VPS13A-201ENST00000355766 ZCWPW2A0A1B0GU75 182 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 A0A1W2PQ67 120 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 FAM47DPA6NHR8 397 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 C10orf142B7Z368 130 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 WNT9AO14904 365 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 POLR3GO15318 223 aaPredicted RBP6.89□□□□□ -1.31
VPS13A-201ENST00000355766 TIMM44O43615 452 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 SOCS5O75159 536 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 CSO75390 466 aaKnown RBP6.89□□□□□ -1.31
VPS13A-201ENST00000355766 ZMPSTE24O75844 475 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 ZWINTO95229 277 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 HMBSP08397 361 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 SNRPAP09012 282 aaKnown RBP6.89□□□□□ -1.31
VPS13A-201ENST00000355766 IFNGR1P15260 489 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 KRT15P19012 456 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 ADRA1DP25100 572 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 TACR1P25103 407 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 GCAP28676 217 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 SSTR1P30872 391 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 GP5P40197 560 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 CSE1LP55060 971 aaKnown RBP6.89□□□□□ -1.31
VPS13A-201ENST00000355766 WNT3AP56704 352 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 RPS24P62847 133 aaKnown RBP6.89□□□□□ -1.31
VPS13A-201ENST00000355766 CBX1P83916 185 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 ACVR1Q04771 509 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 SLC10A7Q0GE19 358 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 GRM3Q14832 879 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 LINC00303Q3SY05 128 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 KBTBD12Q3ZCT8 623 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 KCTD16Q68DU8 428 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 CASC4Q6P4E1 433 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 NCEH1Q6PIU2 408 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 ARHGAP36Q6ZRI8 547 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 RGS9BPQ6ZS82 235 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 USP30Q70CQ3 517 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 PRPF39Q86UA1 669 aaKnown RBP6.89□□□□□ -1.31
VPS13A-201ENST00000355766 EXOC3L1Q86VI1 746 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 MFN1Q8IWA4 741 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.89□□□□□ -1.31
VPS13A-201ENST00000355766 ARRDC2Q8TBH0 407 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 CALML6Q8TD86 181 aa6.89□□□□□ -1.31
VPS13A-201ENST00000355766 WFIKKN2Q8TEU8 576 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms