RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SYN3O14994 580 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 PKMP14618 531 aaKnown RBP15.13■□□□□ 0.01
SHH-201ENST00000297261 PPP2R1BP30154 601 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 LAPTM4AQ15012 233 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 UPP1Q16831 310 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 TNFAIP8L3Q5GJ75 292 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 GRPEL2Q8TAA5 225 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 TM6SF2Q9BZW4 377 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 LRTM1Q9HBL6 345 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 DNMT3LQ9UJW3 386 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 RAB23Q9ULC3 237 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 SOCS2O14508 198 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 CASKO14936 926 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 BMP10O95393 424 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 FAM163BP0C2L3 166 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 UROSP10746 265 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 RPL17P18621 184 aaKnown RBP15.12■□□□□ 0.01
SHH-201ENST00000297261 IMPDH1P20839 514 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 FUT4P22083 530 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 RPL10P27635 214 aaKnown RBP15.12■□□□□ 0.01
SHH-201ENST00000297261 HSPA7P48741 367 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 PMS2P3Q13401 168 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 TSTD2Q5T7W7 516 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 TMEM236Q5W0B7 351 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 ZNF280BQ86YH2 543 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 LINC01465Q8N7H1 131 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 NELL1Q92832 810 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 ZNF347Q96SE7 839 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 DIABLOQ9NR28 239 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 ZDHHC7Q9NXF8 308 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 ZNF224Q9NZL3 707 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 SLC2A6Q9UGQ3 507 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 SCELO95171 688 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 C8BP07358 591 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 CYP2A7P20853 494 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 LPOP22079 712 aaPredicted RBP15.12■□□□□ 0.01
SHH-201ENST00000297261 ARSFP54793 590 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 PIGGQ5H8A4 983 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 PRSS55Q6UWB4 352 aaPredicted RBP15.12■□□□□ 0.01
SHH-201ENST00000297261 DENND1CQ8IV53 801 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 SVOPLQ8N434 492 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 TXNDC5Q8NBS9 432 aaKnown RBP15.12■□□□□ 0.01
SHH-201ENST00000297261 HAPLN3Q96S86 360 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 CNPPD1Q9BV87 410 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 PCDHGA10Q9Y5H3 936 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 EVPLQ92817 2033 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 PRORSD1PA6NEY8 169 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 NOS1APO75052 506 aaPredicted RBP15.12■□□□□ 0.01
SHH-201ENST00000297261 FGF1P05230 155 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 MC4RP32245 332 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 KIR3DL1P43629 444 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 TM4SF4P48230 202 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 GLUD2P49448 558 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 PTSQ03393 145 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 NFATC3Q12968 1075 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 SLC13A2Q13183 592 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 CAMK2GQ13555 558 aaPredicted RBP15.12■□□□□ 0.01
SHH-201ENST00000297261 SMU1Q2TAY7 513 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 TPRG1LQ5T0D9 272 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 HID1Q8IV36 788 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 DPP10Q8N608 796 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 TRPV1Q8NER1 839 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 HEPHQ9BQS7 1158 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 RPF2Q9H7B2 306 aaKnown RBP15.12■□□□□ 0.01
SHH-201ENST00000297261 PTGFRNQ9P2B2 879 aa15.12■□□□□ 0.01
SHH-201ENST00000297261 ILVBLA1L0T0 632 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 HTR3EA5X5Y0 456 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 GNRH1P01148 92 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 CDH1P12830 882 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 AFF1P51825 1210 aaKnown RBP15.11■□□□□ 0.01
SHH-201ENST00000297261 TIGD6Q17RP2 521 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 CTC1Q2NKJ3 1217 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 HOMEZQ8IX15 550 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 SLC7A5P1Q8MH63 180 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 ZNF671Q8TAW3 534 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 SLC13A3Q8WWT9 602 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 CDK15Q96Q40 435 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 TMEM209Q96SK2 561 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 OCEL1Q9H607 264 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 SNTG1Q9NSN8 517 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 SACM1LQ9NTJ5 587 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 MALT1Q9UDY8 824 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 DYRK1BQ9Y463 629 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 TESMINQ9Y4I5 508 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 TSPAN4O14817 238 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 RPLP0P05388 317 aaKnown RBP15.11■□□□□ 0.01
SHH-201ENST00000297261 HOXD12P35452 270 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 BMXP51813 675 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 PRMT2P55345 433 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 EEFSECP57772 596 aaKnown RBP15.11■□□□□ 0.01
SHH-201ENST00000297261 CD83Q01151 205 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 SLC2A7Q6PXP3 512 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 DDX53Q86TM3 631 aaKnown RBP15.11■□□□□ 0.01
SHH-201ENST00000297261 ITIH5Q86UX2 942 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 Q96MT0 163 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 ZNF623O75123 536 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 CPNE3O75131 537 aaKnown RBP15.11■□□□□ 0.01
SHH-201ENST00000297261 XYLBO75191 536 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 MYCLP1P12525 358 aaPredicted RBP15.11■□□□□ 0.01
SHH-201ENST00000297261 HNF4AP41235 474 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms