RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 BCL10O95999 233 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 CST1P01037 141 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 ALPLP05186 524 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 ENO2P09104 434 aaPredicted RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 CYP4B1P13584 511 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 HTR1EP28566 365 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 CA5AP35218 305 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 TLE2Q04725 743 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 TWF1Q12792 350 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 SPCS2Q15005 226 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 CTU2Q2VPK5 515 aaKnown RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 FAM174BQ3ZCQ3 159 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 TRIM60Q495X7 471 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 PERM1Q5SV97 790 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 FAM171A1Q5VUB5 890 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 GALNT5Q7Z7M9 940 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 TMEM179BQ7Z7N9 219 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 RBM23Q86U06 439 aaKnown RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 RIMKLAQ8IXN7 391 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 SCAIQ8N9R8 606 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 SDCCAG3Q96C92 435 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 CCDC138Q96M89 665 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 TRIB3Q96RU7 358 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 BRINP2Q9C0B6 783 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 AMBRA1Q9C0C7 1298 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 NDEL1Q9GZM8 345 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 C11orf49Q9H6J7 331 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 ADGRE2Q9UHX3 823 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 CDH7Q9ULB5 785 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 COQ6Q9Y2Z9 468 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 PCDHB3Q9Y5E6 796 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 TRIM64A6NGJ6 449 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 C2orf81A6NN90 581 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 G3V2T6 193 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 XPNPEP2O43895 674 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 HS6ST1O60243 411 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 DEAF1O75398 565 aaPredicted RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 PRKD3O94806 890 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 C1QCP02747 245 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 ANXA6P08133 673 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 CDH1P12830 882 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 GATMP50440 423 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 ALDH3A2P51648 485 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 PLA2G16P53816 162 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 ATN1P54259 1190 aaPredicted RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 FPGSQ05932 587 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 FOXM1Q08050 763 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 DUSP4Q13115 394 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 TRIP4Q15650 581 aaPredicted RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 CYP2A13Q16696 494 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 ZNF829Q3KNS6 432 aaPredicted RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 PARP15Q460N3 678 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 SULT1C3Q6IMI6 304 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 ZNF773Q6PK81 442 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 MBOAT1Q6ZNC8 495 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 GCNT7Q6ZNI0 430 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 DCDC5Q6ZRR9 648 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 GOLGA7Q7Z5G4 137 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 ANKRD46Q86W74 232 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 ZDHHC13Q8IUH4 622 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 DENND1CQ8IV53 801 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 SLC22A15Q8IZD6 547 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 C10orf111Q8N326 155 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 PAF1Q8N7H5 531 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 DBF4BQ8NFT6 615 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 OR13F1Q8NGS4 319 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 BORCS5Q969J3 196 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 GFM2Q969S9 779 aaKnown RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 ZNF583Q96ND8 569 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 FBXO44Q9H4M3 255 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 SCUBE2Q9NQ36 999 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 GKN1Q9NS71 199 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 SLC6A13Q9NSD5 602 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 RIC8BQ9NVN3 520 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 F5H5T6 163 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 STX7O15400 261 aaKnown RBP9.87□□□□□ -0.83
LIG3-201ENST00000262327 VPS4BO75351 444 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 INMTO95050 263 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 MLYCDO95822 493 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 MBL2P11226 248 aaPredicted RBP9.87□□□□□ -0.83
LIG3-201ENST00000262327 AQP6Q13520 282 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 FAM98BQ52LJ0 330 aaKnown RBP9.87□□□□□ -0.83
LIG3-201ENST00000262327 SPANXN4Q5MJ08 99 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 IRAK1BP1Q5VVH5 260 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 BROXQ5VW32 411 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 AFTPHQ6ULP2 937 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 RSPO2Q6UXX9 243 aaPredicted RBP9.87□□□□□ -0.83
LIG3-201ENST00000262327 THAP5Q7Z6K1 395 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 GALNT10Q86SR1 603 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 OR2T12Q8NG77 320 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 CNIH3Q8TBE1 160 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 ISG20Q96AZ6 181 aaKnown RBP9.87□□□□□ -0.83
LIG3-201ENST00000262327 COX4I2Q96KJ9 171 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 BOCQ9BWV1 1114 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 IPPKQ9H8X2 491 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 PDFQ9HBH1 243 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 TRNAU1APQ9NX07 287 aaKnown RBP9.87□□□□□ -0.83
LIG3-201ENST00000262327 UBA2Q9UBT2 640 aaPredicted RBP9.87□□□□□ -0.83
LIG3-201ENST00000262327 TBX21Q9UL17 535 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 PCDHB8Q9UN66 801 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms