RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 CETN2P41208 172 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 CDKN1CP49918 316 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 PMS2P54278 862 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 TUBB4BP68371 445 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 XIAPP98170 497 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 TUBB2AQ13885 445 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 CPZQ66K79 652 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 TCTN3Q6NUS6 607 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 BPHLQ86WA6 291 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 KMT5CQ86Y97 462 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 CCDC170Q8IYT3 715 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 ULK4Q96C45 1275 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 CLIP3Q96DZ5 547 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 COPS8Q99627 209 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 TUBB2BQ9BVA1 445 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 SRMSQ9H3Y6 488 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 KIR3DX1Q9H7L2 352 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 SEMA5BQ9P283 1151 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 FARSAQ9Y285 508 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 PCDHGA6Q9Y5G7 932 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 PCDHA3Q9Y5H8 950 aa17.12■□□□□ 0.33
SHKBP1-223ENST00000600552 PTPN13Q12923 2485 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 CCDC78A2IDD5 438 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 RCCD1A6NED2 376 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 SOWAHDA6NJG2 315 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 PJA2O43164 708 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 SGTAO43765 313 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 PDGFAP04085 211 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 KLK3P07288 261 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 PRSS56P0CW18 603 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 ATP1B2P14415 290 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 MC4RP32245 332 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 COPS2P61201 443 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 GPS2Q13227 327 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 PRKG2Q13237 762 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 BCL7AQ4VC05 210 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 FAM69BQ5VUD6 431 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 NXPE1Q8N323 547 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 HM13Q8TCT9 377 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 DNAJC1Q96KC8 554 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 SPATA13Q96N96 652 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 FCRL4Q96PJ5 515 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 CCM2Q9BSQ5 444 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 GPR87Q9BY21 358 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 SLC7A5P2Q9GIP4 190 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 CHST8Q9H2A9 424 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 XKR8Q9H6D3 395 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 FANCEQ9HB96 536 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 PIH1D1Q9NWS0 290 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 ANKMY1Q9P2S6 941 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 HEBP2Q9Y5Z4 205 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 EPN1Q9Y6I3 576 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 NAV2Q8IVL1 2488 aa17.11■□□□□ 0.33
SHKBP1-223ENST00000600552 FLNCQ14315 2725 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 TMEM150CB9EJG8 249 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 IPO7O95373 1038 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 NDUFS1P28331 727 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 CTNNA1P35221 906 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 PREPP48147 710 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 RWDD2BP57060 319 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 SEMA5AQ13591 1074 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 IL10RAQ13651 578 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 CAPRIN2Q6IMN6 1127 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 LCN10Q6JVE6 187 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 ZNF449Q6P9G9 518 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 ARHGEF18Q6ZSZ5 1173 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 SNX20Q7Z614 316 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 ATCAYQ86WG3 371 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 SLC38A9Q8NBW4 561 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 ZFPM2Q8WW38 1151 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 LRRC45Q96CN5 670 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 ZNF501Q96CX3 271 aaPredicted RBP17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 HGH1Q9BTY7 390 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 ACSS2Q9NR19 701 aa17.1■□□□□ 0.33
SHKBP1-223ENST00000600552 TTLL8A6PVC2 850 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 IFRD1O00458 451 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 MAP3K7O43318 606 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 TJP3O95049 919 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 PYGMP11217 842 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 PVRP15151 417 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 CYP2A7P20853 494 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 PDHA2P29803 388 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 HADHAP40939 763 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 LMAN1P49257 510 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 PGDP52209 483 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 ZNF140P52738 457 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 POU6F1Q14863 301 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 BRD3Q15059 726 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 UGT8Q16880 541 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 DENND5AQ6IQ26 1287 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 SYVN1Q86TM6 617 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 SERPINA9Q86WD7 417 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 CLDN19Q8N6F1 224 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 ENDOVQ8N8Q3 282 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 FAM71DQ8N9W8 422 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 ACVR1CQ8NER5 493 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 LINC00615Q96LM1 132 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 ALS2CR12Q96Q35 445 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 SLC25A23Q9BV35 468 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 COG4Q9H9E3 785 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms