RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 MLXIPLQ9NP71 852 aa13.66□□□□□ -0.22
SHKBP1-218ENST00000598907 FAM114A2Q9NRY5 505 aa13.66□□□□□ -0.22
SHKBP1-218ENST00000598907 SIDT1Q9NXL6 827 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-218ENST00000598907 UBP1Q9NZI7 540 aa13.66□□□□□ -0.22
SHKBP1-218ENST00000598907 PLEKHM1Q9Y4G2 1056 aa13.66□□□□□ -0.22
SHKBP1-218ENST00000598907 ESYT3A0FGR9 886 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 GOLGA6CA6NDK9 693 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 GOLGA6BA6NDN3 693 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 A8MX80 341 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 NDC80O14777 642 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 CTIFO43310 598 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 ZG16O60844 167 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 SOCS5O75159 536 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 TMEM63AO94886 807 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 SNRPB2P08579 225 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 ELFN1P0C7U0 828 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 GOLGA6DP0CG33 693 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 POLD2P49005 469 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 ITGA8P53708 1063 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 WNT3AP56704 352 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 TRAF2Q12933 501 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 RALGDSQ12967 914 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 MORF4L2Q15014 288 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 WDR74Q6RFH5 385 aaPredicted RBP13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 ZNF534Q76KX8 674 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 GDF7Q7Z4P5 450 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 IQCKQ8N0W5 287 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 PAF1Q8N7H5 531 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 RBMXL3Q8N7X1 1067 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 EIF1ADQ8N9N8 165 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 HCAR2Q8TDS4 363 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 ZNF641Q96N77 438 aaPredicted RBP13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 FAM129AQ9BZQ8 928 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 ATP13A3Q9H7F0 1226 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 LRRC40Q9H9A6 602 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 ARNT2Q9HBZ2 717 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 ZDHHC18Q9NUE0 388 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 TRNAU1APQ9NX07 287 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 GOLGA6AQ9NYA3 693 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 PCDHGC4Q9Y5F7 938 aa13.65□□□□□ -0.22
SHKBP1-218ENST00000598907 TSPAN11A1L157 253 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 A6NL46 340 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 LRRTM2O43300 516 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 PMPCBO75439 489 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 CEACAM5P06731 702 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 APRTP07741 180 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 CCNYL3P0C7X3 344 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 ECHS1P30084 290 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 ITGA1P56199 1179 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 PER3P56645 1201 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 SH3BP2P78314 561 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 CAV1Q03135 178 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 BCL2L1Q07817 233 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 MSLNQ13421 630 aaPredicted RBP13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 IL10RAQ13651 578 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 ACOX1Q15067 660 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 ZRSR2Q15696 482 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 DENND5AQ6IQ26 1287 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 PNCKQ6P2M8 343 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 CAMK1DQ8IU85 385 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 IFT20Q8IY31 132 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 MYRIPQ8NFW9 859 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 OR6C1Q96RD1 312 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 NUDT9Q9BW91 350 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 SUV39H2Q9H5I1 410 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 PHPT1Q9NRX4 125 aaPredicted RBP13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 ANAPC5Q9UJX4 755 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 SHOC2Q9UQ13 582 aa13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 V9GYY5 206 aaPredicted RBP13.64□□□□□ -0.23
SHKBP1-218ENST00000598907 PCSK5Q92824 1860 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 DIDO1Q9BTC0 2240 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 NAV3Q8IVL0 2385 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 A0A1W2PQ67 120 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 E7EVH7 732 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 PGLSO95336 258 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 AGTP01019 485 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 PDHA1P08559 390 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 HOXC4P09017 264 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 MLNP12872 115 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 SERPINA4P29622 427 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 TRIM23P36406 574 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 GRIA1P42261 906 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 MAGEA3P43357 314 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 CARSP49589 748 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 SEPHS1P49903 392 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 RPL26P61254 145 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 CALCOCO2Q13137 446 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 OLIG2Q13516 323 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 CUL1Q13616 776 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 RAPSNQ13702 412 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 SPARCL1Q14515 664 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 UGT8Q16880 541 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 WDR93Q6P2C0 686 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 LRRC8BQ6P9F7 803 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 LINC00523Q86TU6 105 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 CAND1Q86VP6 1230 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 FDCSPQ8NFU4 85 aa13.63□□□□□ -0.23
SHKBP1-218ENST00000598907 IPMKQ8NFU5 416 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms