RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 C16orf45Q96MC5 204 aaPredicted RBP13.52□□□□□ -0.25
UPF1-205ENST00000598209 DCBLD2Q96PD2 775 aa13.52□□□□□ -0.25
UPF1-205ENST00000598209 FERD3LQ96RJ6 166 aa13.52□□□□□ -0.25
UPF1-205ENST00000598209 CARD6Q9BX69 1037 aa13.52□□□□□ -0.25
UPF1-205ENST00000598209 TSSK1BQ9BXA7 367 aa13.52□□□□□ -0.25
UPF1-205ENST00000598209 KIR3DX1Q9H7L2 352 aa13.52□□□□□ -0.25
UPF1-205ENST00000598209 IL1RAPL1Q9NZN1 696 aa13.52□□□□□ -0.25
UPF1-205ENST00000598209 KLHL3Q9UH77 587 aa13.52□□□□□ -0.25
UPF1-205ENST00000598209 SLC24A2Q9UI40 661 aa13.52□□□□□ -0.25
UPF1-205ENST00000598209 COLEC10Q9Y6Z7 277 aa13.52□□□□□ -0.25
UPF1-205ENST00000598209 EPG5Q9HCE0 2579 aa13.52□□□□□ -0.25
UPF1-205ENST00000598209 DMXL2Q8TDJ6 3036 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 ADAMTS20P59510 1910 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 ZCWPW2A0A1B0GU75 182 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 UBA6A0AVT1 1052 aaPredicted RBP13.51□□□□□ -0.25
UPF1-205ENST00000598209 SLC5A10A0PJK1 596 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 IQCF5A8MTL0 148 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 CAPN5O15484 640 aaPredicted RBP13.51□□□□□ -0.25
UPF1-205ENST00000598209 USP1O94782 785 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 C9P02748 559 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 CCL4P13236 92 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 OGNP20774 298 aaKnown RBP13.51□□□□□ -0.25
UPF1-205ENST00000598209 RPS3P23396 243 aaKnown RBP eCLIP13.51□□□□□ -0.252e-7■■■■□ 25.4
UPF1-205ENST00000598209 NDUFS1P28331 727 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 CCR7P32248 378 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 MAPK10P53779 464 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 EIF3BP55884 814 aaKnown RBP13.51□□□□□ -0.25
UPF1-205ENST00000598209 PCBP4P57723 403 aaKnown RBP13.51□□□□□ -0.25
UPF1-205ENST00000598209 C2orf54Q08AI8 447 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 TYSND1Q2T9J0 566 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 DNAJC21Q5F1R6 531 aaKnown RBP13.51□□□□□ -0.25
UPF1-205ENST00000598209 RNF187Q5TA31 235 aaPredicted RBP13.51□□□□□ -0.25
UPF1-205ENST00000598209 PTRHD1Q6GMV3 140 aaKnown RBP13.51□□□□□ -0.25
UPF1-205ENST00000598209 NEPROQ6NW34 567 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 KLHL35Q6PF15 583 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 ARHGAP22Q7Z5H3 698 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 CLEC14AQ86T13 490 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 LRRC6Q86X45 466 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 KRT222Q8N1A0 295 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 TFGQ92734 400 aaPredicted RBP13.51□□□□□ -0.25
UPF1-205ENST00000598209 SNF8Q96H20 258 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 TGM7Q96PF1 710 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 TCF12Q99081 682 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 TRIM31Q9BZY9 425 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 P2RY12Q9H244 342 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 GNPTGQ9UJJ9 305 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 CACNA1BQ00975 2339 aa13.51□□□□□ -0.25
UPF1-205ENST00000598209 EFCAB8A8MWE9 144 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 BHMG1C9JSJ3 638 aaPredicted RBP13.5□□□□□ -0.25
UPF1-205ENST00000598209 SMAPO00193 183 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 PFDN6O15212 129 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 BANF1O75531 89 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 SEC31AO94979 1220 aaKnown RBP13.5□□□□□ -0.25
UPF1-205ENST00000598209 FGF3P11487 239 aaPredicted RBP13.5□□□□□ -0.25
UPF1-205ENST00000598209 PGAM1P18669 254 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 SLC5A2P31639 672 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 EIF2S3P41091 472 aaKnown RBP13.5□□□□□ -0.25
UPF1-205ENST00000598209 LEPRP48357 1165 aaKnown RBP13.5□□□□□ -0.25
UPF1-205ENST00000598209 ITGA8P53708 1063 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 CSE1LP55060 971 aaKnown RBP13.5□□□□□ -0.25
UPF1-205ENST00000598209 MRPS25P82663 173 aaKnown RBP13.5□□□□□ -0.25
UPF1-205ENST00000598209 PLOD1Q02809 727 aaPredicted RBP13.5□□□□□ -0.25
UPF1-205ENST00000598209 DHX9Q08211 1270 aaKnown RBP13.5□□□□□ -0.25
UPF1-205ENST00000598209 THOC5Q13769 683 aaKnown RBP13.5□□□□□ -0.25
UPF1-205ENST00000598209 LONRF1Q17RB8 773 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 BBS9Q3SYG4 887 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 MSS51Q4VC12 460 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 HIBCHQ6NVY1 386 aaPredicted RBP13.5□□□□□ -0.25
UPF1-205ENST00000598209 IRGCQ6NXR0 463 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 CENPUQ71F23 418 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 CILP2Q8IUL8 1156 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 ZNF248Q8NDW4 579 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 PHC3Q8NDX5 983 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 ACVR1CQ8NER5 493 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 LPGAT1Q92604 370 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 USP7Q93009 1102 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 NAF1Q96HR8 494 aaKnown RBP13.5□□□□□ -0.25
UPF1-205ENST00000598209 C9orf72Q96LT7 481 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 PANX3Q96QZ0 392 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 RAB33BQ9H082 229 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 MVB12BQ9H7P6 319 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 C20orf96Q9NUD7 363 aaPredicted RBP13.5□□□□□ -0.25
UPF1-205ENST00000598209 OCIAD1Q9NX40 245 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 EPHA6Q9UF33 1036 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 PCDHGA7Q9Y5G6 932 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 FAM169AQ9Y6X4 670 aa13.5□□□□□ -0.25
UPF1-205ENST00000598209 A0A087WV48 116 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 OR5K3A6NET4 321 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 FAM187AA6NFU0 413 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 EFCAB7A8K855 629 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 RRP8O43159 456 aaKnown RBP13.49□□□□□ -0.25
UPF1-205ENST00000598209 APOA4P06727 396 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 ANKRD34CP0C6C1 535 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 AOAHP28039 575 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 ACADLP28330 430 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 FMO4P31512 558 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 RPL21P46778 160 aaKnown RBP13.49□□□□□ -0.25
UPF1-205ENST00000598209 PPP1CAP62136 330 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 HSPA14Q0VDF9 509 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 CTSL3PQ5NE16 218 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms