RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 PMS2CLQ68D20 193 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 SBSNQ6UWP8 590 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 FAM83HQ6ZRV2 1179 aaPredicted RBP14.35□□□□□ -0.11
VRK3-212ENST00000596814 FRA10AC1Q70Z53 315 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 NUDCD3Q8IVD9 361 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 CKAP2Q8WWK9 683 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 CAPS2Q9BXY5 557 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 DPEP2Q9H4A9 486 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 KLC4Q9NSK0 619 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 ADAM21Q9UKJ8 722 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 TP53BP1Q12888 1972 aaPredicted RBP14.35□□□□□ -0.11
VRK3-212ENST00000596814 ANKRD12Q6UB98 2062 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 SYCE1LA8MT33 242 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 GPR37L1O60883 481 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 C8GP07360 202 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 KCNA4P22459 653 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 PDHA2P29803 388 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 ALDH3A1P30838 453 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 MAPK9P45984 424 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 DHPSP49366 369 aaPredicted RBP14.35□□□□□ -0.11
VRK3-212ENST00000596814 SP140Q13342 867 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 FZD2Q14332 565 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 PDK4Q16654 411 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 ZNF528Q3MIS6 628 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 LYSMD4Q5XG99 296 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 LAYNQ6UX15 382 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 RD3Q7Z3Z2 195 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 PARGQ86W56 976 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 GPSM1Q86YR5 675 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 HID1Q8IV36 788 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 C10orf107Q8IVU9 208 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 C1orf216Q8TAB5 229 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 SREK1Q8WXA9 508 aaKnown RBP14.35□□□□□ -0.11
VRK3-212ENST00000596814 NELL1Q92832 810 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 OSGEPL1Q9H4B0 414 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 ADAMTS6Q9UKP5 1117 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 PNMA8BQ9ULN7 279 aaPredicted RBP14.35□□□□□ -0.11
VRK3-212ENST00000596814 KCNK6Q9Y257 313 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 DGKBQ9Y6T7 804 aa14.35□□□□□ -0.11
VRK3-212ENST00000596814 A0A0C4DFX4 3053 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 FAM86C2PA6NEL3 165 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 SUPT3HB4E1H0 165 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 UBXN8O00124 270 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 TNFRSF10AO00220 468 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 SCAMP1O15126 338 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 SMIM24O75264 130 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 SUPT3HO75486 399 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 RASGRP1O95267 797 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 TNFP01375 233 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 ATP5F1P24539 256 aaPredicted RBP14.34□□□□□ -0.11
VRK3-212ENST00000596814 KCNC1P48547 511 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 GNGT1P63211 74 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 EIF2B5Q13144 721 aaKnown RBP14.34□□□□□ -0.11
VRK3-212ENST00000596814 LRP8Q14114 963 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 ANGPT1Q15389 498 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 PPP1R3AQ16821 1122 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 PLK5Q496M5 336 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 METRNLQ641Q3 311 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 TRIM42Q8IWZ5 723 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 MAGEB18Q96M61 343 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 FOPNLQ96NB1 174 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 OR52A5Q9H2C5 316 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 ZSCAN32Q9NX65 697 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 SIRPGQ9P1W8 387 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 ACSL5Q9ULC5 683 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 PLEKHM1Q9Y4G2 1056 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 OARD1Q9Y530 152 aa14.34□□□□□ -0.11
VRK3-212ENST00000596814 NEMP2A6NFY4 417 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 A8MT66 165 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 TLR4O00206 839 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 SLC16A5O15375 505 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 BCAT2O15382 392 aaPredicted RBP14.33□□□□□ -0.12
VRK3-212ENST00000596814 HRO43593 1189 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 DLX3O60479 287 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 MATN4O95460 622 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 SP9P0CG40 484 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 TPBGLP0DKB5 382 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 GFAPP14136 432 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 BGNP21810 368 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 ITPKAP23677 461 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 CNR2P34972 360 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 HK3P52790 923 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 ABRQ12979 859 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 TGFBIQ15582 683 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 TUBB8Q3ZCM7 444 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 LIPMQ5VYY2 423 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 UBE2R2Q712K3 238 aaPredicted RBP14.33□□□□□ -0.12
VRK3-212ENST00000596814 CEP68Q76N32 757 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 PDZD3Q86UT5 571 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 PPP1R14CQ8TAE6 165 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 LRRC8CQ8TDW0 803 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 ASB11Q8WXH4 323 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 CCDC126Q96EE4 140 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 CCDC134Q9H6E4 229 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 OXSMQ9NWU1 459 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 TRNAU1APQ9NX07 287 aaKnown RBP14.33□□□□□ -0.12
VRK3-212ENST00000596814 UTP6Q9NYH9 597 aaKnown RBP14.33□□□□□ -0.12
VRK3-212ENST00000596814 NUDT4Q9NZJ9 180 aa14.33□□□□□ -0.12
VRK3-212ENST00000596814 ATXN2Q99700 1313 aaKnown RBP14.33□□□□□ -0.12
VRK3-212ENST00000596814 PABPN1LA6NDY0 278 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms