RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 ALG14Q96F25 216 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 SERINC2Q96SA4 455 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 DESI2Q9BSY9 194 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 NUP58Q9BVL2 599 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 NUF2Q9BZD4 464 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 RNF41Q9H4P4 317 aaPredicted RBP3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 MROH8Q9H579 483 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 EPHX3Q9H6B9 360 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 LZTFL1Q9NQ48 299 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 PIH1D3Q9NQM4 214 aaKnown RBP3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 KLHL1Q9NR64 748 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 RMND1Q9NWS8 449 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 VPS18Q9P253 973 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 CTNNAL1Q9UBT7 734 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 RSPH14Q9UHP6 348 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 LCMT1Q9UIC8 334 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 TINAGQ9UJW2 476 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 RALYQ9UKM9 306 aaKnown RBP3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 HPCAL4Q9UM19 191 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 GDAQ9Y2T3 454 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 SAR1BQ9Y6B6 198 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 KIF1AQ12756 1690 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 UBR2Q8IWV8 1755 aa3.96□□□□□ -1.78
SMCHD1-208ENST00000583344 MROH5Q6ZUA9 1318 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 DISP2A7MBM2 1401 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 TNS2Q63HR2 1409 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 MEGF6O75095 1541 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 PARP4Q9UKK3 1724 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 C1orf167Q5SNV9 1468 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 A0A1W2PRQ8 180 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 ERICH2A1L162 156 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 FAM90A7PA6NKC0 464 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 FAM90A22PA8MWA6 464 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 FAM90A12PA8MX19 464 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 FAM90A23PA8MXZ1 464 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 EIF3CLB5ME19 914 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 ERVV-1B6SEH8 477 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 PEX12O00623 359 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 CAPN9O14815 690 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 HOXC11O43248 304 aaPredicted RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 N4BP1O75113 896 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 LCA5LO95447 670 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 ZNF883P0CG24 379 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 CALM1P0DP23 149 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 CALM2P0DP24 149 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 CALM3P0DP25 149 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 EPB41P11171 864 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 VDRP11473 427 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 PTPN2P17706 415 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 CHATP28329 748 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 HNRNPH3P31942 346 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 KRT20P35900 424 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 KRT2P35908 639 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 LONP1P36776 959 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 PPP1R2P41236 205 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 TNNT3P45378 269 aaPredicted RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 FMO5P49326 533 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 BLKP51451 505 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 NR1H2P55055 460 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 CKAP4Q07065 602 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 TRPC3Q13507 836 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 KRT31Q15323 416 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 SLC45A4Q5BKX6 768 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 DNAJC21Q5F1R6 531 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 SPECC1Q5M775 1068 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 GPATCH4Q5T3I0 446 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 ALS2CLQ60I27 953 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 WDR59Q6PJI9 974 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 GFRALQ6UXV0 394 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 GBP6Q6ZN66 633 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 NOXA1Q86UR1 476 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 MOGAT3Q86VF5 341 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 KRTAP7-1Q8IUC3 87 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 FOXRED2Q8IWF2 684 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 EFCAB13Q8IY85 973 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 C10orf67Q8IYJ2 551 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 KIAA2013Q8IYS2 634 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 ADSSL1Q8N142 457 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 C4orf32Q8N8J7 132 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 ANKRD20A12PQ8NF67 263 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 SLC20A1Q8WUM9 679 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 EPSTI1Q96J88 318 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 TWNKQ96RR1 684 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 CHP1Q99653 195 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 SH3GL2Q99962 352 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 KXD1Q9BQD3 176 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 CHCHD6Q9BRQ6 235 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 HAUS8Q9BT25 410 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 KRTAP4-4Q9BYR3 166 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 NACAP1Q9BZK3 213 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 EDEM3Q9BZQ6 932 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 NAPBQ9H115 298 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 THAP9Q9H5L6 903 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 C17orf75Q9HAS0 396 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 CNGB3Q9NQW8 809 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 SH3GLB2Q9NR46 395 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 OLA1Q9NTK5 396 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 RBM28Q9NW13 759 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 KIF17Q9P2E2 1029 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 AASSQ9UDR5 926 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms