RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 MS4A14Q96JA4 679 aa14.48□□□□□ -0.09
SS18-212ENST00000579061 OSBPL9Q96SU4 736 aa14.48□□□□□ -0.09
SS18-212ENST00000579061 CD180Q99467 661 aa14.48□□□□□ -0.09
SS18-212ENST00000579061 SPRY4Q9C004 299 aa14.48□□□□□ -0.09
SS18-212ENST00000579061 MVB12BQ9H7P6 319 aa14.48□□□□□ -0.09
SS18-212ENST00000579061 MRM3Q9HC36 420 aaKnown RBP14.48□□□□□ -0.09
SS18-212ENST00000579061 CHRAC1Q9NRG0 131 aa14.48□□□□□ -0.09
SS18-212ENST00000579061 TREX1Q9NSU2 369 aa14.48□□□□□ -0.09
SS18-212ENST00000579061 ANAPC5Q9UJX4 755 aa14.48□□□□□ -0.09
SS18-212ENST00000579061 PRSS21Q9Y6M0 314 aa14.48□□□□□ -0.09
SS18-212ENST00000579061 OR5K3A6NET4 321 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 POLR1CO15160 346 aaPredicted RBP14.47□□□□□ -0.09
SS18-212ENST00000579061 RASSF9O75901 435 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 KRT14P02533 472 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 LEPRP48357 1165 aaKnown RBP14.47□□□□□ -0.09
SS18-212ENST00000579061 ATP1A2P50993 1020 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 KRT33BQ14525 404 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 SOWAHCQ53LP3 525 aaPredicted RBP14.47□□□□□ -0.09
SS18-212ENST00000579061 MANEAQ5SRI9 462 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 IRGCQ6NXR0 463 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 DUS1LQ6P1R4 473 aaKnown RBP14.47□□□□□ -0.09
SS18-212ENST00000579061 TTC27Q6P3X3 843 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 CYB5D1Q6P9G0 228 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 CCDC137Q6PK04 289 aaKnown RBP14.47□□□□□ -0.09
SS18-212ENST00000579061 OOSP2Q86WS3 158 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 KMT5CQ86Y97 462 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 CARFQ8N187 725 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 MPP5Q8N3R9 675 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 ACVR1CQ8NER5 493 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 KIFC1Q9BW19 673 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 CATSPERZQ9NTU4 200 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 TRMT1Q9NXH9 659 aaKnown RBP14.47□□□□□ -0.09
SS18-212ENST00000579061 SNX12Q9UMY4 172 aa14.47□□□□□ -0.09
SS18-212ENST00000579061 TMEM184BQ9Y519 407 aaPredicted RBP14.47□□□□□ -0.09
SS18-212ENST00000579061 TLCD2A6NGC4 264 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 TK2O00142 265 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 MATN2O00339 956 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 EFSO43281 561 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 PHF2O75151 1096 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 NELFEP18615 380 aaKnown RBP14.46□□□□□ -0.09
SS18-212ENST00000579061 PDHA2P29803 388 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 FNTAP49354 379 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 TTPAP49638 278 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 SEPHS1P49903 392 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 GPS1Q13098 491 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 IL11RAQ14626 422 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 GRK7Q8WTQ7 553 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 COG1Q8WTW3 980 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 NKD1Q969G9 470 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 WBP1Q96G27 269 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 SLC41A2Q96JW4 573 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 FERD3LQ96RJ6 166 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 CARD6Q9BX69 1037 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 AP1M1Q9BXS5 423 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 TRIT1Q9H3H1 467 aaKnown RBP14.46□□□□□ -0.09
SS18-212ENST00000579061 TFB2MQ9H5Q4 396 aaKnown RBP14.46□□□□□ -0.09
SS18-212ENST00000579061 HRASLS2Q9NWW9 162 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 PILRAQ9UKJ1 303 aa14.46□□□□□ -0.09
SS18-212ENST00000579061 GOLGA6L10A0A0M3HER8 536 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 TCRBV7S3A2A0A539 114 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 SLC5A10A0PJK1 596 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 ERVH48-1M5A8F1 160 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 ATXN7O15265 892 aaPredicted RBP14.45□□□□□ -0.1
SS18-212ENST00000579061 CD3EAPO15446 510 aaKnown RBP14.45□□□□□ -0.1
SS18-212ENST00000579061 KIF1CO43896 1103 aaKnown RBP14.45□□□□□ -0.1
SS18-212ENST00000579061 OR1I1O60431 355 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 RAD1O60671 282 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 MLNP12872 115 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 TCP1P17987 556 aaKnown RBP14.45□□□□□ -0.1
SS18-212ENST00000579061 MGAT1P26572 445 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 CRADDP78560 199 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 BOP1Q14137 746 aaKnown RBP14.45□□□□□ -0.1
SS18-212ENST00000579061 MAP7Q14244 749 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 TRIP13Q15645 432 aaPredicted RBP14.45□□□□□ -0.1
SS18-212ENST00000579061 ARMC6Q6NXE6 501 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 FAM92BQ6ZTR7 304 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 BPHLQ86WA6 291 aaPredicted RBP14.45□□□□□ -0.1
SS18-212ENST00000579061 MCUQ8NE86 351 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 JPH3Q8WXH2 748 aaPredicted RBP14.45□□□□□ -0.1
SS18-212ENST00000579061 ELMO1Q92556 727 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 TFGQ92734 400 aaPredicted RBP14.45□□□□□ -0.1
SS18-212ENST00000579061 CTRCQ99895 268 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 TSSK1BQ9BXA7 367 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 APMAPQ9HDC9 416 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 SYBUQ9NX95 663 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 SOX13Q9UN79 622 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 NEU2Q9Y3R4 380 aa14.45□□□□□ -0.1
SS18-212ENST00000579061 OR6C74A6NCV1 312 aa14.44□□□□□ -0.1
SS18-212ENST00000579061 PRMT5O14744 637 aaPredicted RBP14.44□□□□□ -0.1
SS18-212ENST00000579061 DLGAP3O95886 979 aa14.44□□□□□ -0.1
SS18-212ENST00000579061 FGF5P12034 268 aa14.44□□□□□ -0.1
SS18-212ENST00000579061 MAP4P27816 1152 aaKnown RBP14.44□□□□□ -0.1
SS18-212ENST00000579061 ACADLP28330 430 aa14.44□□□□□ -0.1
SS18-212ENST00000579061 NMBRP28336 390 aa14.44□□□□□ -0.1
SS18-212ENST00000579061 PREPP48147 710 aa14.44□□□□□ -0.1
SS18-212ENST00000579061 VPS41P49754 854 aa14.44□□□□□ -0.1
SS18-212ENST00000579061 PPP1CAP62136 330 aa14.44□□□□□ -0.1
SS18-212ENST00000579061 FOXM1Q08050 763 aa14.44□□□□□ -0.1
SS18-212ENST00000579061 PRKAA1Q13131 559 aa14.44□□□□□ -0.1
SS18-212ENST00000579061 SEMA3AQ14563 771 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms