RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 GDF5P43026 501 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 RGS4P49798 205 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 AP1S1P61966 158 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 PLIN5Q00G26 463 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 PHKG1Q16816 387 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 TMEM214Q6NUQ4 689 aaKnown RBP22.38■■□□□ 1.17
VPS53-211ENST00000571805 SNX20Q7Z614 316 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 LEMD2Q8NC56 503 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 OR6K2Q8NGY2 324 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 TRMT2BQ96GJ1 504 aaKnown RBP22.38■■□□□ 1.17
VPS53-211ENST00000571805 YTHDF1Q9BYJ9 559 aaKnown RBP22.38■■□□□ 1.17
VPS53-211ENST00000571805 TM6SF2Q9BZW4 377 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 ZFYVE1Q9HBF4 777 aa22.38■■□□□ 1.17
VPS53-211ENST00000571805 TRBV5-4A0A0C4DH59 114 aa22.37■■□□□ 1.17
VPS53-211ENST00000571805 GFRA2O00451 464 aa22.37■■□□□ 1.17
VPS53-211ENST00000571805 GREM1O60565 184 aa22.37■■□□□ 1.17
VPS53-211ENST00000571805 RAP2AP10114 183 aa22.37■■□□□ 1.17
VPS53-211ENST00000571805 RPL38P63173 70 aaKnown RBP22.37■■□□□ 1.17
VPS53-211ENST00000571805 SMAD3P84022 425 aaKnown RBP22.37■■□□□ 1.17
VPS53-211ENST00000571805 PMS2P3Q13401 168 aa22.37■■□□□ 1.17
VPS53-211ENST00000571805 BFSP2Q13515 415 aa22.37■■□□□ 1.17
VPS53-211ENST00000571805 PTGR1Q14914 329 aa22.37■■□□□ 1.17
VPS53-211ENST00000571805 CDKN3Q16667 212 aa22.37■■□□□ 1.17
VPS53-211ENST00000571805 DHRS4L2Q6PKH6 230 aa22.37■■□□□ 1.17
VPS53-211ENST00000571805 ITFG1Q8TB96 612 aa22.37■■□□□ 1.17
VPS53-211ENST00000571805 C12orf43Q96C57 262 aaKnown RBP22.37■■□□□ 1.17
VPS53-211ENST00000571805 CCDC115Q96NT0 180 aa22.37■■□□□ 1.17
VPS53-211ENST00000571805 CD244Q9BZW8 370 aa22.37■■□□□ 1.17
VPS53-211ENST00000571805 CDC14AQ9UNH5 594 aa22.37■■□□□ 1.17
VPS53-211ENST00000571805 SMAD6O43541 496 aaKnown RBP22.36■■□□□ 1.17
VPS53-211ENST00000571805 KCNH1O95259 989 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 TRIM16O95361 564 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 DGKAP23743 735 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 ARSFP54793 590 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 DCTN2Q13561 401 aaKnown RBP22.36■■□□□ 1.17
VPS53-211ENST00000571805 PLCL1Q15111 1095 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 OTUD3Q5T2D3 398 aaPredicted RBP22.36■■□□□ 1.17
VPS53-211ENST00000571805 GPRC6AQ5T6X5 926 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 TMEM150AQ86TG1 271 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 ADAMTS19Q8TE59 1207 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 SLC13A3Q8WWT9 602 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 GTF2H4Q92759 462 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 SLC22A12Q96S37 553 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 CARS2Q9HA77 564 aaKnown RBP22.36■■□□□ 1.17
VPS53-211ENST00000571805 FARSBQ9NSD9 589 aaKnown RBP22.36■■□□□ 1.17
VPS53-211ENST00000571805 ABT1Q9ULW3 272 aaKnown RBP22.36■■□□□ 1.17
VPS53-211ENST00000571805 YIPF1Q9Y548 306 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 RGS14O43566 566 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 UGT1A1P22309 533 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 UGT1A4P22310 534 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 UGT1A3P35503 534 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 UGT1A5P35504 534 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 PIK3CGP48736 1102 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 ALDH7A1P49419 539 aaKnown RBP22.36■■□□□ 1.17
VPS53-211ENST00000571805 SMU1Q2TAY7 513 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 RNF165Q6ZSG1 346 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 TMBIM1Q969X1 311 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 RHBDF1Q96CC6 855 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 PHF12Q96QT6 1004 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 ZNF106Q9H2Y7 1883 aaKnown RBP22.36■■□□□ 1.17
VPS53-211ENST00000571805 GORASP2Q9H8Y8 452 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 CXorf21Q9HAI6 301 aa22.36■■□□□ 1.17
VPS53-211ENST00000571805 FFAR3O14843 346 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 GPR42O15529 346 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 DEAF1O75398 565 aaPredicted RBP22.35■■□□□ 1.17
VPS53-211ENST00000571805 TRBC1P01850 177 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 MBL2P11226 248 aaPredicted RBP22.35■■□□□ 1.17
VPS53-211ENST00000571805 TCF3P15923 654 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 ACRV1P26436 265 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 ALDH3A2P51648 485 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 ZXDBP98169 803 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 TAF12Q16514 161 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 FAM98BQ52LJ0 330 aaKnown RBP22.35■■□□□ 1.17
VPS53-211ENST00000571805 AADATQ8N5Z0 425 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 DCAF4L2Q8NA75 395 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 HJURPQ8NCD3 748 aaPredicted RBP22.35■■□□□ 1.17
VPS53-211ENST00000571805 APOL5Q9BWW9 433 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 EVLQ9UI08 416 aaPredicted RBP22.35■■□□□ 1.17
VPS53-211ENST00000571805 EIF3LQ9Y262 564 aaKnown RBP22.35■■□□□ 1.17
VPS53-211ENST00000571805 C1orf232A0A0U1RR37 186 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 CLDN7O95471 211 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 LATS1O95835 1130 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 CCNYL2Q5T2Q4 361 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 TRIM46Q7Z4K8 759 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 APCDD1Q8J025 514 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 ZBTB2Q8N680 514 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 EGFL8Q99944 293 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 C19orf43Q9BQ61 176 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 IKZF5Q9H5V7 419 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 PKD2L2Q9NZM6 624 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 OPTCQ9UBM4 332 aa22.35■■□□□ 1.17
VPS53-211ENST00000571805 SLC28A1O00337 649 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 ALPLP05186 524 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 BPIP17213 487 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 ITGALP20701 1170 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 NFKBIAP25963 317 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 HNF1BP35680 557 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 HMGCS1Q01581 520 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 DAG1Q14118 895 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 RAB39AQ14964 217 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms