RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PRAMEP78395 509 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 GSE1Q14687 1217 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 FASTKD1Q53R41 847 aaKnown RBP14.67□□□□□ -0.06
VPS39-210ENST00000568357 NAPRTQ6XQN6 538 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 CERS6Q6ZMG9 384 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 CAND1Q86VP6 1230 aaKnown RBP14.67□□□□□ -0.06
VPS39-210ENST00000568357 FAM129CQ86XR2 697 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 MFSD3Q96ES6 412 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 SEMA4CQ9C0C4 833 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 B3GNT4Q9C0J1 378 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 SLC39A1Q9NY26 324 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 EPHA6Q9UF33 1036 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 SLC24A2Q9UI40 661 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 PCDHGA3Q9Y5H0 932 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 B3GALT1Q9Y5Z6 326 aa14.67□□□□□ -0.06
VPS39-210ENST00000568357 CD3EAPO15446 510 aaKnown RBP14.66□□□□□ -0.06
VPS39-210ENST00000568357 TMEM63AO94886 807 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 ANKRD34CP0C6C1 535 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 TCP1P17987 556 aaKnown RBP14.66□□□□□ -0.06
VPS39-210ENST00000568357 ARNTP27540 789 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 CXADRP78310 365 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 MC2RQ01718 297 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 TMEM164Q5U3C3 297 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 LYPLAL1Q5VWZ2 237 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 PAPD7Q5XG87 772 aaKnown RBP14.66□□□□□ -0.06
VPS39-210ENST00000568357 ANKS6Q68DC2 871 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 FAM92BQ6ZTR7 304 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 MPP5Q8N3R9 675 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 PHC3Q8NDX5 983 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 ZFPM2Q8WW38 1151 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.66□□□□□ -0.06
VPS39-210ENST00000568357 NRTNQ99748 197 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 CTRCQ99895 268 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 RAB33BQ9H082 229 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 KIR3DX1Q9H7L2 352 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 VPS37BQ9H9H4 285 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 CPNE5Q9HCH3 593 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 CATSPERZQ9NTU4 200 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 COLEC10Q9Y6Z7 277 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 COL6A6A6NMZ7 2263 aa14.66□□□□□ -0.06
VPS39-210ENST00000568357 MGAQ8IWI9 3026 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 GOLGA8MH3BSY2 632 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 FANCGO15287 622 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 TOX3O15405 576 aaPredicted RBP14.65□□□□□ -0.06
VPS39-210ENST00000568357 EFSO43281 561 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 GSTM1P09488 218 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 CD151P48509 253 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 FNTAP49354 379 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 SEPHS1P49903 392 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 SARNPP82979 210 aaKnown RBP14.65□□□□□ -0.06
VPS39-210ENST00000568357 GSTM4Q03013 218 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 RPA4Q13156 261 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 SRSF6Q13247 344 aaKnown RBP14.65□□□□□ -0.06
VPS39-210ENST00000568357 BRD3Q15059 726 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 PLCL1Q15111 1095 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 IRGCQ6NXR0 463 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 DTX1Q86Y01 620 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 CREG2Q8IUH2 290 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 MCUQ8NE86 351 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 ELMO1Q92556 727 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 ZDHHC12Q96GR4 267 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 FERD3LQ96RJ6 166 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 TTC1Q99614 292 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 TRIM56Q9BRZ2 755 aaKnown RBP14.65□□□□□ -0.06
VPS39-210ENST00000568357 DDA1Q9BW61 102 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 DDX47Q9H0S4 455 aaKnown RBP14.65□□□□□ -0.06
VPS39-210ENST00000568357 MRM3Q9HC36 420 aaKnown RBP14.65□□□□□ -0.06
VPS39-210ENST00000568357 APMAPQ9HDC9 416 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 FBXO8Q9NRD0 319 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 HRASLS2Q9NWW9 162 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.65□□□□□ -0.06
VPS39-210ENST00000568357 SOX13Q9UN79 622 aa14.65□□□□□ -0.06
VPS39-210ENST00000568357 GOLGA6L10A0A0M3HER8 536 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 SLC5A10A0PJK1 596 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 OR5K3A6NET4 321 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 IQCF5A8MTL0 148 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 BHMG1C9JSJ3 638 aaPredicted RBP14.64□□□□□ -0.07
VPS39-210ENST00000568357 GOLGA8KD6RF30 607 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 GOLGA8TH3BQL2 631 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 QSOX1O00391 747 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 LIN7AO14910 233 aaPredicted RBP14.64□□□□□ -0.07
VPS39-210ENST00000568357 RASSF9O75901 435 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 VAPBO95292 243 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 OR56A5P0C7T3 313 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 LIPCP11150 499 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 ITGB6P18564 788 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 SH3BP2P78314 561 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 KRT33BQ14525 404 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 TAF1BQ53T94 588 aaPredicted RBP14.64□□□□□ -0.07
VPS39-210ENST00000568357 DCAF12Q5T6F0 453 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 CACHD1Q5VU97 1274 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 BROXQ5VW32 411 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 KLHL35Q6PF15 583 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 PRSS42Q7Z5A4 293 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 NAT8LQ8N9F0 302 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 OR4E2Q8NGC2 313 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 KLHL6Q8WZ60 621 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 TFGQ92734 400 aaPredicted RBP14.64□□□□□ -0.07
VPS39-210ENST00000568357 CAPZA3Q96KX2 299 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 ASPSCR1Q9BZE9 553 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms