RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 AFF4Q9UHB7 1163 aaKnown RBP12.15□□□□□ -0.46
LDLR-205ENST00000557933 PCTPQ9UKL6 214 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 CDH9Q9ULB4 789 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 PMF1-BGLAPU3KQ54 211 aa12.15□□□□□ -0.46
LDLR-205ENST00000557933 PSMD11O00231 422 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 SLC1A7O00341 560 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 AQP9O43315 295 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 TBC1D4O60343 1298 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 JRKO75564 520 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 MYO1DO94832 1006 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 CHEK2O96017 543 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 ANXA6P08133 673 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 FCGR1AP12314 374 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 PCSK1P29120 753 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 STC1P52823 247 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 CYP4F2P78329 520 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 ZXDBP98169 803 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 TSPY1Q01534 308 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 CYP4F3Q08477 520 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 MAP2K5Q13163 448 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 CTF1Q16619 201 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 TIGD7Q6NT04 549 aaPredicted RBP12.14□□□□□ -0.47
LDLR-205ENST00000557933 NIPAL1Q6NVV3 410 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 ADCK1Q86TW2 530 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 HID1Q8IV36 788 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 TRUB1Q8WWH5 349 aaKnown RBP12.14□□□□□ -0.47
LDLR-205ENST00000557933 SLC47A1Q96FL8 570 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 MAGED4Q96JG8 741 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 RMI1Q9H9A7 625 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 HPS4Q9NQG7 708 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 PDCD11Q14690 1871 aaKnown RBP12.14□□□□□ -0.47
LDLR-205ENST00000557933 COL1A2P08123 1366 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 MYO15AQ9UKN7 3530 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 TRIM64A6NGJ6 449 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 E5RI56 91 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 RAMP2O60895 175 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 NBNO60934 754 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 NDUFS2O75306 463 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 GMNNO75496 209 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 EEDO75530 441 aaKnown RBP12.14□□□□□ -0.47
LDLR-205ENST00000557933 WISP3O95389 354 aaPredicted RBP12.14□□□□□ -0.47
LDLR-205ENST00000557933 LCKP06239 509 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 TCEA1P23193 301 aaKnown RBP12.14□□□□□ -0.47
LDLR-205ENST00000557933 GTF2E2P29084 291 aaKnown RBP12.14□□□□□ -0.47
LDLR-205ENST00000557933 CD52P31358 61 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 KCNQ1P51787 676 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 TP53BP2Q13625 1128 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 MANEALQ5VSG8 457 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 CXCL17Q6UXB2 119 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 RNF19BQ6ZMZ0 732 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 GLT6D1Q7Z4J2 308 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 RIMKLAQ8IXN7 391 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 ZNF555Q8NEP9 628 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 MDGA1Q8NFP4 955 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 OR4F6Q8NGB9 312 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 SPC25Q9HBM1 224 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 TAS2R13Q9NYV9 303 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 Q9Y3F1 56 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 SPEGQ15772 3267 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 SMIM35A0A1B0GVV1 85 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 TBX1O43435 398 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 MGEA5O60502 916 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 KERAO60938 352 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 MATN4O95460 622 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 PRAMEF12O95522 483 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 SERPINA1P01009 418 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 CDH1P12830 882 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 AQP1P29972 269 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 PBX3P40426 434 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 PSEN2P49810 448 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 TBX4P57082 545 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 RAD51Q06609 339 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 TRIM32Q13049 653 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 KCNJ8Q15842 424 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 UPP1Q16831 310 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 C10orf120Q5SQS8 335 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 SPATC1Q76KD6 591 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 HEATR4Q86WZ0 1026 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 GPSM1Q86YR5 675 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 ZNF599Q96NL3 588 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 C6orf62Q9GZU0 229 aaPredicted RBP12.14□□□□□ -0.47
LDLR-205ENST00000557933 FAM124BQ9H5Z6 455 aaPredicted RBP12.14□□□□□ -0.47
LDLR-205ENST00000557933 ABCC13Q9NSE7 274 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 HACD3Q9P035 362 aa12.14□□□□□ -0.47
LDLR-205ENST00000557933 LOC100130705A0A1B0GUX0 176 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 RRN3P2A6NIE6 340 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 F2P00734 622 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 DNTTP04053 509 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 FGF4P08620 206 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 RAP2AP10114 183 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 CTPS1P17812 591 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 ATP4BP51164 291 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 TMBIM6P55061 237 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 ERVK-8P63133 956 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 EMX2Q04743 252 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 SF1Q15637 639 aaKnown RBP12.13□□□□□ -0.47
LDLR-205ENST00000557933 AASDHQ4L235 1098 aaPredicted RBP12.13□□□□□ -0.47
LDLR-205ENST00000557933 COLEC12Q5KU26 742 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 NETO1Q8TDF5 533 aa12.13□□□□□ -0.47
LDLR-205ENST00000557933 PTCD2Q8WV60 388 aaKnown RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms