RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 C9orf72Q96LT7 481 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 OCIAD1Q9NX40 245 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 SAMD15Q9P1V8 674 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 SLC24A2Q9UI40 661 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 ANAPC5Q9UJX4 755 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 ACSL6Q9UKU0 697 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 HEBP2Q9Y5Z4 205 aa13.39□□□□□ -0.27
SHMT2-219ENST00000555563 URB1O60287 2271 aaKnown RBP13.38□□□□□ -0.27
SHMT2-219ENST00000555563 NBEAQ8NFP9 2946 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 GOLGA8KD6RF30 607 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 GOLGA8TH3BQL2 631 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 IFRD1O00458 451 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-219ENST00000555563 LIN7AO14910 233 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-219ENST00000555563 NVLO15381 856 aaKnown RBP13.38□□□□□ -0.27
SHMT2-219ENST00000555563 ITGB6P18564 788 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 PPARGP37231 505 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-219ENST00000555563 TTPAP49638 278 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 TLE3Q04726 772 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 BRD3Q15059 726 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 SYTL3Q4VX76 610 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 ARMC3Q5W041 872 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 IRGCQ6NXR0 463 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 PDZD3Q86UT5 571 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 BMPERQ8N8U9 685 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 ART4Q93070 314 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 ZNF669Q96BR6 464 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-219ENST00000555563 DSPP15924 2871 aaKnown RBP13.38□□□□□ -0.27
SHMT2-219ENST00000555563 PKD1L2Q7Z442 2459 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 LAMA5O15230 3695 aa13.38□□□□□ -0.27
SHMT2-219ENST00000555563 SLC5A10A0PJK1 596 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 OR5K3A6NET4 321 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 SDR42E2A6NKP2 422 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 IQCF5A8MTL0 148 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 B4E171 279 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 F8W8V4 182 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 DNALI1O14645 258 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-219ENST00000555563 PRMT5O14744 637 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-219ENST00000555563 KLK10O43240 276 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 KIF1CO43896 1103 aaKnown RBP13.37□□□□□ -0.27
SHMT2-219ENST00000555563 RASSF9O75901 435 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 NDUFS1P28331 727 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 CCR7P32248 378 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 TSPAN7P41732 249 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 ARCN1P48444 511 aaKnown RBP13.37□□□□□ -0.27
SHMT2-219ENST00000555563 CD151P48509 253 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 DR1Q01658 176 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 CLN3Q13286 438 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 KRT33BQ14525 404 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 TYSND1Q2T9J0 566 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 IZUMO3Q5VZ72 239 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 ZNF449Q6P9G9 518 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 KLHL35Q6PF15 583 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 FAM92BQ6ZTR7 304 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 PRSS42Q7Z5A4 293 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 ACVR1CQ8NER5 493 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 ZFPM2Q8WW38 1151 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 RUNDC3BQ96NL0 473 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 FCRL3Q96P31 734 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-219ENST00000555563 TRIM51Q9BSJ1 452 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 HGH1Q9BTY7 390 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 DDA1Q9BW61 102 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 RAB33BQ9H082 229 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 SIDT1Q9NXL6 827 aaKnown RBP13.37□□□□□ -0.27
SHMT2-219ENST00000555563 SLC39A1Q9NY26 324 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 IL1RAPL1Q9NZN1 696 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 EPHA6Q9UF33 1036 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 PCDHGA3Q9Y5H0 932 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 COLEC10Q9Y6Z7 277 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 ZFYVE26Q68DK2 2539 aa13.37□□□□□ -0.27
SHMT2-219ENST00000555563 CELSR3Q9NYQ7 3312 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 FAM237BA0A1B0GVD1 139 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 BHMG1C9JSJ3 638 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-219ENST00000555563 CCDC188H7C350 402 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 TOX3O15405 576 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-219ENST00000555563 NDUFS3O75489 264 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 PAMP19021 973 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 RPS3P23396 243 aaKnown RBP eCLIP13.36□□□□□ -0.276e-7■■■□□ 16.5
SHMT2-219ENST00000555563 IVDP26440 423 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 PAFAH1B1P43034 410 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 CSE1LP55060 971 aaKnown RBP13.36□□□□□ -0.27
SHMT2-219ENST00000555563 EIF3BP55884 814 aaKnown RBP13.36□□□□□ -0.27
SHMT2-219ENST00000555563 DHX34Q14147 1143 aaKnown RBP13.36□□□□□ -0.27
SHMT2-219ENST00000555563 ANKRD20A4Q4UJ75 823 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 SOWAHCQ53LP3 525 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-219ENST00000555563 TMEM164Q5U3C3 297 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 CACHD1Q5VU97 1274 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 ANKS6Q68DC2 871 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 PTRHD1Q6GMV3 140 aaKnown RBP13.36□□□□□ -0.27
SHMT2-219ENST00000555563 MRNIPQ6NTE8 343 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 SYDE1Q6ZW31 735 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-219ENST00000555563 OOSP2Q86WS3 158 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 ZFAND4Q86XD8 727 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 KRT222Q8N1A0 295 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 PHC3Q8NDX5 983 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 TFGQ92734 400 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-219ENST00000555563 ZDHHC12Q96GR4 267 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 TAAR9Q96RI9 348 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 FERD3LQ96RJ6 166 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 TSSK1BQ9BXA7 367 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 DPH1Q9BZG8 443 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms