RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 RNPEPL1Q9HAU8 725 aa5.62□□□□□ -1.51
SCFD1-208ENST00000553278 CLK4Q9HAZ1 481 aaKnown RBP5.62□□□□□ -1.51
SCFD1-208ENST00000553278 MYNNQ9NPC7 610 aa5.62□□□□□ -1.51
SCFD1-208ENST00000553278 MCM9Q9NXL9 1143 aa5.62□□□□□ -1.51
SCFD1-208ENST00000553278 TAS2R3Q9NYW6 316 aa5.62□□□□□ -1.51
SCFD1-208ENST00000553278 ARPP21Q9UBL0 812 aaPredicted RBP5.62□□□□□ -1.51
SCFD1-208ENST00000553278 FBXL2Q9UKC9 423 aa5.62□□□□□ -1.51
SCFD1-208ENST00000553278 RNF150Q9ULK6 438 aa5.62□□□□□ -1.51
SCFD1-208ENST00000553278 TDRKHQ9Y2W6 561 aaKnown RBP5.62□□□□□ -1.51
SCFD1-208ENST00000553278 FEZF1A0PJY2 475 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 TMEM191CA6NGB0 347 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 TMEM221A6NGB7 291 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 PLK4O00444 970 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 PLOD2O00469 737 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 ANKRD28O15084 1053 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 TTI1O43156 1089 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 TLX3O43711 291 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-208ENST00000553278 FOXD2O60548 495 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-208ENST00000553278 FCGR3BO75015 233 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 VNN2O95498 520 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 ACSL3O95573 720 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 HOXA5P20719 270 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 TKTP29401 623 aaKnown RBP5.61□□□□□ -1.51
SCFD1-208ENST00000553278 LHX1P48742 406 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 ALDH7A1P49419 539 aaKnown RBP5.61□□□□□ -1.51
SCFD1-208ENST00000553278 CTSCP53634 463 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 HNRNPH2P55795 449 aaKnown RBP5.61□□□□□ -1.51
SCFD1-208ENST00000553278 ID2Q02363 134 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 GFPT1Q06210 699 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-208ENST00000553278 PLA2G7Q13093 441 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 SLC39A14Q15043 492 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 CTF1Q16619 201 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 IFI44LQ53G44 452 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 C18orf63Q68DL7 685 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 FAM109BQ6ICB4 259 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-208ENST00000553278 UNC5DQ6UXZ4 953 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 GPR180Q86V85 440 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 EXOC3L1Q86VI1 746 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 ZC3HC1Q86WB0 502 aaKnown RBP5.61□□□□□ -1.51
SCFD1-208ENST00000553278 ENGASEQ8NFI3 743 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 PPP4R1Q8TF05 950 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 RHBDF1Q96CC6 855 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 SPATA33Q96N06 139 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 LRFN5Q96NI6 719 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 FAM111AQ96PZ2 611 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 OSBPL8Q9BZF1 889 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 LSG1Q9H089 658 aaKnown RBP5.61□□□□□ -1.51
SCFD1-208ENST00000553278 HSD3B7Q9H2F3 369 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 PRMT8Q9NR22 394 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-208ENST00000553278 SLCO1C1Q9NYB5 712 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 RHCGQ9UBD6 479 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 GMEB2Q9UKD1 530 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 RAI2Q9Y5P3 530 aa5.61□□□□□ -1.51
SCFD1-208ENST00000553278 ATXN2Q99700 1313 aaKnown RBP5.6□□□□□ -1.51
SCFD1-208ENST00000553278 A0A0G2JK05 382 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 A0A1W2PPW3 197 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 KBTBD13C9JR72 458 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 H0YGN5 161 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 PPIP5K2O43314 1243 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 ITM2AO43736 263 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 IFNA2P01563 188 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 FGBP02675 491 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 SAGP10523 405 aaPredicted RBP5.6□□□□□ -1.51
SCFD1-208ENST00000553278 CCNA2P20248 432 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 SLC6A6P31641 620 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 HSD17B3P37058 310 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 RGS7P49802 495 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 GMPSP49915 693 aaPredicted RBP5.6□□□□□ -1.51
SCFD1-208ENST00000553278 ATXN3P54252 364 aaPredicted RBP5.6□□□□□ -1.51
SCFD1-208ENST00000553278 P2RX3P56373 397 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 UBASH3AP57075 661 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 CD81P60033 236 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 DLK1P80370 383 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 EFNB3Q15768 340 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 INAQ16352 499 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 HSP90AA5PQ58FG0 334 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 Q5PR19 223 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 DEF8Q6ZN54 512 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 TMPRSS11FQ6ZWK6 438 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 PIGWQ7Z7B1 504 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 AADATQ8N5Z0 425 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 CNNM3Q8NE01 707 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 MTERF3Q96E29 417 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 BICD1Q96G01 975 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 FOXP1Q9H334 677 aaPredicted RBP5.6□□□□□ -1.51
SCFD1-208ENST00000553278 LIN28AQ9H9Z2 209 aaKnown RBP5.6□□□□□ -1.51
SCFD1-208ENST00000553278 CDH20Q9HBT6 801 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 ZBTB40Q9NUA8 1239 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 DNAJC11Q9NVH1 559 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 MSRB1Q9NZV6 116 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 PACSIN3Q9UKS6 424 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 AP1M2Q9Y6Q5 423 aa5.6□□□□□ -1.51
SCFD1-208ENST00000553278 POLR2AP24928 1970 aaKnown RBP5.6□□□□□ -1.51
SCFD1-208ENST00000553278 A0A0A6YYC8 382 aaPredicted RBP5.59□□□□□ -1.51
SCFD1-208ENST00000553278 RGSL1A5PLK6 1076 aa5.59□□□□□ -1.51
SCFD1-208ENST00000553278 LRRC3CA6NJW4 275 aa5.59□□□□□ -1.51
SCFD1-208ENST00000553278 DUXAA6NLW8 204 aa5.59□□□□□ -1.51
SCFD1-208ENST00000553278 I3L1I5 382 aaPredicted RBP5.59□□□□□ -1.51
SCFD1-208ENST00000553278 LDB2O43679 373 aa5.59□□□□□ -1.51
SCFD1-208ENST00000553278 NOL3O60936 208 aaKnown RBP5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms