RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 WDFY2Q96P53 400 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 GCNAQ96QF7 691 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 SPAG5Q96R06 1193 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 CITED2Q99967 270 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-208ENST00000551691 CLSTN3Q9BQT9 956 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 BOLA2Q9H3K6 86 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 OSGEPL1Q9H4B0 414 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 POLR1BQ9H9Y6 1135 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 KIF9Q9HAQ2 790 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 IL1RAPL2Q9NP60 686 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 ARHGEF38Q9NXL2 777 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 NCKIPSDQ9NZQ3 722 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 OGFRQ9NZT2 677 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 MARCH4Q9P2E8 410 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-208ENST00000551691 ANKMY1Q9P2S6 941 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 LRIT1Q9P2V4 623 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 MTRRQ9UBK8 725 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 SEL1LQ9UBV2 794 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 IL17BQ9UHF5 180 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 INTS6Q9UL03 887 aaKnown RBP3.82□□□□□ -1.8
LIMA1-208ENST00000551691 FZD4Q9ULV1 537 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 FRMD4BQ9Y2L6 1034 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 ADAM18Q9Y3Q7 739 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 PCDHGA5Q9Y5G8 931 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 SIRT4Q9Y6E7 314 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-208ENST00000551691 SQORQ9Y6N5 450 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 CAPN7Q9Y6W3 813 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 FBN3Q75N90 2809 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 NOTCH4Q99466 2003 aa3.82□□□□□ -1.8
LIMA1-208ENST00000551691 CENPEQ02224 2701 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 GOLGA4Q13439 2230 aaKnown RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 CACNA1DQ01668 2161 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 CCDC151A5D8V7 595 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 LRRC72A6NJI9 287 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ENO4A6NNW6 628 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 UBE2CO00762 179 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 SCAMP1O15126 338 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 MPPED1O15442 326 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 PROM1O43490 865 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 LIASO43766 372 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 DIAPH2O60879 1101 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 USP12O75317 370 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 RNF8O76064 485 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 GLUD1P00367 558 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 SERPINC1P01008 464 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ENO1P06733 434 aaKnown RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 PRR35P0CG20 571 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 TGFB3P10600 412 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 GP1BBP13224 206 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 FDPSP14324 419 aaKnown RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ATP6V1B1P15313 513 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 PTGS2P35354 604 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 PTPN9P43378 593 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ABCG1P45844 678 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 CAMPP49913 170 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 CSRP3P50461 194 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 HSD17B4P51659 736 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 POLGP54098 1239 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 RAD23AP54725 363 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ADPRHP54922 357 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 RBP5P82980 135 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 PSG6Q00889 435 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ACSM2AQ08AH3 577 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 BFSP1Q12934 665 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 GIT2Q14161 759 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ERMARDQ5T6L9 678 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ACSM2BQ68CK6 577 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 IL27RAQ6UWB1 636 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 NAPRTQ6XQN6 538 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 RAPH1Q70E73 1250 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 MOB3CQ70IA8 216 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ZSCAN30Q86W11 494 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 METTL23Q86XA0 190 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 TDRPQ86YL5 185 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 CEP97Q8IW35 865 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 CEP57L1Q8IYX8 460 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 NUP93Q8N1F7 819 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 LNX2Q8N448 690 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ZCCHC9Q8N567 271 aaKnown RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ZBTB8BQ8NAP8 495 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 SETD9Q8NE22 299 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 PROKR1Q8TCW9 393 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 MGARPQ8TDB4 240 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 PSPC1Q8WXF1 523 aaKnown RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 SGCDQ92629 289 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 PIGKQ92643 395 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 VOPP1Q96AW1 172 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 SLC22A18Q96BI1 424 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 DAZAP1Q96EP5 407 aaKnown RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 MMABQ96EY8 250 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 PGAP3Q96FM1 320 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ZNF764Q96H86 408 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ZNF845Q96IR2 970 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 TEFMQ96QE5 360 aaKnown RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ABHD1Q96SE0 405 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 PCYT2Q99447 389 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 TMEM47Q9BQJ4 181 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 HGH1Q9BTY7 390 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 STRA6Q9BX79 667 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 MRPL9Q9BYD2 267 aaKnown RBP3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms