RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RAB6CQ9H0N0 254 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 TRPC7Q9HCX4 862 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 PFDN4Q9NQP4 134 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 TCP11L1Q9NUJ3 509 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 TMEM30AQ9NV96 361 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 GAGE2DQ9UEU5 116 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 RALYQ9UKM9 306 aaKnown RBP3.96□□□□□ -1.78
VPS29-205ENST00000548539 VDAC3Q9Y277 283 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 ASTN2O75129 1339 aaPredicted RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 ZNF541Q9H0D2 1346 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 CLEC18AA5D8T8 446 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 LILRA5A6NI73 299 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 SLC28A2O43868 658 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 TSPAN1O60635 241 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 WDR1O75083 606 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 MED24O75448 989 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 RECQL5O94762 991 aaPredicted RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 ZBTB11O95625 1053 aaPredicted RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 RPN1P04843 607 aaKnown RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 NGFRP08138 427 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 FAM106CPP0CH98 169 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 SCG2P13521 617 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 IFNAR1P17181 557 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 CYP11B2P19099 503 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 ACHEP22303 614 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 HSPA4P34932 840 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 PRKCIP41743 596 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 TPD52P55327 224 aaPredicted RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 EGR4Q05215 589 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 LTBQ06643 244 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 ACSM1Q08AH1 577 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 GTF2H2Q13888 395 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 SLC39A14Q15043 492 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 HYAL4Q2M3T9 481 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 CAVIN1Q6NZI2 390 aaKnown RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 GTF2H2CQ6P1K8 395 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 ZNF704Q6ZNC4 412 aaPredicted RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 ASB18Q6ZVZ8 466 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 SFR1Q86XK3 245 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 TTC30BQ8N4P2 665 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 CLEC18CQ8NCF0 446 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 LILRB1Q8NHL6 650 aaPredicted RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 EXD1Q8NHP7 514 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 TMEM255BQ8WV15 326 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 FIG4Q92562 907 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 DAZLQ92904 295 aaKnown RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 ATP6V1E2Q96A05 226 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 MTERF3Q96E29 417 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 CDCA5Q96FF9 252 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 RAB3IPQ96QF0 476 aaPredicted RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 GAREM1Q9H706 876 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 ZWILCHQ9H900 591 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 PIH1D3Q9NQM4 214 aaKnown RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 CHCHD3Q9NX63 227 aaKnown RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 RNF150Q9ULK6 438 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 YIPF1Q9Y548 306 aa3.95□□□□□ -1.78
VPS29-205ENST00000548539 SPIN1Q9Y657 262 aaPredicted RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 SOS1Q07889 1333 aaPredicted RBP3.95□□□□□ -1.78
VPS29-205ENST00000548539 ARHGEF37A1IGU5 675 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 KRTAP9-6A8MVA2 160 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 PAPSS2O95340 614 aaPredicted RBP3.94□□□□□ -1.78
VPS29-205ENST00000548539 CDH1P12830 882 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 TLX1P31314 330 aaPredicted RBP3.94□□□□□ -1.78
VPS29-205ENST00000548539 GP5P40197 560 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 USP8P40818 1118 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 ZNF75DP51815 510 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 RBPJQ06330 500 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 MZT1Q08AG7 82 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 ZBTB17Q13105 803 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 SNTA1Q13424 505 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 SCARB2Q14108 478 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 GFI1BQ5VTD9 330 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 IRAK1BP1Q5VVH5 260 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 TRNP1Q6NT89 227 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 FAM171BQ6P995 826 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 TMPRSS11FQ6ZWK6 438 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 ADCK2Q7Z695 626 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 KMT5CQ86Y97 462 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 MFN1Q8IWA4 741 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 CEP57L1Q8IYX8 460 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 OR8H3Q8N146 312 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 CCAR2Q8N163 923 aaKnown RBP3.94□□□□□ -1.78
VPS29-205ENST00000548539 IQCF1Q8N6M8 205 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 IQUBQ8NA54 791 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 OR5M8Q8NGP6 311 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 GOT1L1Q8NHS2 421 aaPredicted RBP3.94□□□□□ -1.78
VPS29-205ENST00000548539 LINGO1Q96FE5 620 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 ZNF385AQ96PM9 386 aaKnown RBP3.94□□□□□ -1.78
VPS29-205ENST00000548539 SLC25A23Q9BV35 468 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 ALDH8A1Q9H2A2 487 aaPredicted RBP3.94□□□□□ -1.78
VPS29-205ENST00000548539 DPP3Q9NY33 737 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 IL17BQ9UHF5 180 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 LIPGQ9Y5X9 500 aa3.94□□□□□ -1.78
VPS29-205ENST00000548539 TCF20Q9UGU0 1960 aaKnown RBP3.93□□□□□ -1.78
VPS29-205ENST00000548539 TRAV34A0A0B4J273 112 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 ZCWPW2A0A1B0GU75 182 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 C5orf60A6NFR6 353 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 ANKRD66B4E2M5 251 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 GPR137BO60478 399 aa3.93□□□□□ -1.78
VPS29-205ENST00000548539 LIPFP07098 398 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms