RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 SPON1Q9HCB6 807 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 DDX4Q9NQI0 724 aaKnown RBP12.62□□□□□ -0.39
PTCH1-212ENST00000546744 TMEM45AQ9NWC5 275 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 TAS2R9Q9NYW1 312 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 RGS17Q9UGC6 210 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-212ENST00000546744 SCN7AQ01118 1682 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 MYPNQ86TC9 1320 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 KANTRA0A1W2PQU2 76 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 L7N2F9 121 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 FPGTO14772 594 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 FFAR3O14843 346 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 AURKAO14965 403 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 GPR42O15529 346 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 PRMT3O60678 531 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 CLDN9O95484 217 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 ANXA3P12429 323 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 OR1G1P47890 313 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 TXNL4AP83876 142 aaKnown RBP12.62□□□□□ -0.39
PTCH1-212ENST00000546744 TFAP2DQ7Z6R9 452 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 TREML1Q86YW5 311 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 AKAP1Q92667 903 aaKnown RBP eCLIP12.62□□□□□ -0.39
PTCH1-212ENST00000546744 OR52B2Q96RD2 323 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 GPR22Q99680 433 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 MIOSQ9NXC5 875 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 ZNF490Q9ULM2 529 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-212ENST00000546744 NDST3O95803 873 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 IFNA6P05013 189 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 CDK4P11802 303 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 TSPAN8P19075 237 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 ECHS1P30084 290 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 TAS2R39P59534 338 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 CD83Q01151 205 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 CPSF6Q16630 551 aaKnown RBP eCLIP12.62□□□□□ -0.39
PTCH1-212ENST00000546744 KIAA1614Q5VZ46 1190 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 TRMT10BQ6PF06 316 aaKnown RBP12.62□□□□□ -0.39
PTCH1-212ENST00000546744 ZNF367Q7RTV3 350 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 MYO19Q96H55 970 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 ZNF641Q96N77 438 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-212ENST00000546744 MIPEPQ99797 713 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 MGME1Q9BQP7 344 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 ARHGEF4Q9NR80 690 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 SEMA3GQ9NS98 782 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 TAF1P21675 1872 aa12.62□□□□□ -0.39
PTCH1-212ENST00000546744 ZSCAN5BA6NJL1 495 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 CYP7B1O75881 506 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 INSRRP14616 1297 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 GSTM3P21266 225 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 CLK2P49760 499 aaKnown RBP12.61□□□□□ -0.39
PTCH1-212ENST00000546744 GMPSP49915 693 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-212ENST00000546744 CYP20A1Q6UW02 462 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 PLPPR4Q7Z2D5 763 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 LIN28AQ9H9Z2 209 aaKnown RBP12.61□□□□□ -0.39
PTCH1-212ENST00000546744 TM9SF3Q9HD45 589 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 KLK14Q9P0G3 267 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 ADAMTS6Q9UKP5 1117 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 A0A1W2PQ67 120 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 BHMG1C9JSJ3 638 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-212ENST00000546744 H3BRB1 525 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 M0R233 179 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 ESR1P03372 595 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 HMGN1P05114 100 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 TLX1P31314 330 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-212ENST00000546744 PARP15Q460N3 678 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 TSTD2Q5T7W7 516 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 CCBE1Q6UXH8 406 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-212ENST00000546744 SMG7Q92540 1137 aaKnown RBP12.61□□□□□ -0.39
PTCH1-212ENST00000546744 THRSPQ92748 146 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 TUT1Q9H6E5 874 aaKnown RBP12.61□□□□□ -0.39
PTCH1-212ENST00000546744 CHRAC1Q9NRG0 131 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 COL20A1Q9P218 1284 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 RUVBL1Q9Y265 456 aaKnown RBP12.61□□□□□ -0.39
PTCH1-212ENST00000546744 CARNS1A5YM72 827 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 MAGEB17A8MXT2 336 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 SLC9A3R1O14745 358 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-212ENST00000546744 PER2O15055 1255 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 CRYZL1O95825 349 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 ZNF24P17028 368 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 RPS14P62263 151 aaKnown RBP12.61□□□□□ -0.39
PTCH1-212ENST00000546744 PEX6Q13608 980 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 GET4Q7L5D6 327 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-212ENST00000546744 ADGRD2Q7Z7M1 963 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 ZNF567Q8N184 647 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 GPRC5AQ8NFJ5 357 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 MFSD3Q96ES6 412 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 SMAD5Q99717 465 aaKnown RBP12.61□□□□□ -0.39
PTCH1-212ENST00000546744 KCNS3Q9BQ31 491 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 FGFBP2Q9BYJ0 223 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 FAM83DQ9H4H8 585 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 SEC14L3Q9UDX4 400 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 MEMO1Q9Y316 297 aa12.61□□□□□ -0.39
PTCH1-212ENST00000546744 MFSD11O43934 449 aa12.6□□□□□ -0.39
PTCH1-212ENST00000546744 TRIM3O75382 744 aaPredicted RBP12.6□□□□□ -0.39
PTCH1-212ENST00000546744 EPCAMP16422 314 aa12.6□□□□□ -0.39
PTCH1-212ENST00000546744 HTR1EP28566 365 aa12.6□□□□□ -0.39
PTCH1-212ENST00000546744 GTF2E2P29084 291 aaKnown RBP12.6□□□□□ -0.39
PTCH1-212ENST00000546744 LCN1P31025 176 aa12.6□□□□□ -0.39
PTCH1-212ENST00000546744 GRM5P41594 1212 aa12.6□□□□□ -0.39
PTCH1-212ENST00000546744 DNASE1L3Q13609 305 aa12.6□□□□□ -0.39
PTCH1-212ENST00000546744 ARHGAP15Q53QZ3 475 aa12.6□□□□□ -0.39
PTCH1-212ENST00000546744 ZNF311Q5JNZ3 666 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms