RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 DENND6AQ8IWF6 608 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 RBM12BQ8IXT5 1001 aaKnown RBP9.49□□□□□ -0.89
YBX3-212ENST00000542002 LSMEM2Q8N112 164 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 BMPERQ8N8U9 685 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 OR4E2Q8NGC2 313 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 SNIP1Q8TAD8 396 aaKnown RBP9.49□□□□□ -0.89
YBX3-212ENST00000542002 ELMO1Q92556 727 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 LPGAT1Q92604 370 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 USP7Q93009 1102 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 CRELD1Q96HD1 420 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 NAF1Q96HR8 494 aaKnown RBP9.49□□□□□ -0.89
YBX3-212ENST00000542002 C9orf72Q96LT7 481 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 PPM1MQ96MI6 270 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 ZNF578Q96N58 590 aaPredicted RBP9.49□□□□□ -0.89
YBX3-212ENST00000542002 TGM7Q96PF1 710 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 FERD3LQ96RJ6 166 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 CMKLR1Q99788 373 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 CARD6Q9BX69 1037 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 TRIM31Q9BZY9 425 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 STN1Q9H668 368 aaKnown RBP9.49□□□□□ -0.89
YBX3-212ENST00000542002 KIR3DX1Q9H7L2 352 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 FOXJ2Q9P0K8 574 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 SNX24Q9Y343 169 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 MAD1L1Q9Y6D9 718 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 RPS6KL1Q9Y6S9 549 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 MAP1BP46821 2468 aaKnown RBP9.49□□□□□ -0.89
YBX3-212ENST00000542002 USP24Q9UPU5 2620 aa9.49□□□□□ -0.89
YBX3-212ENST00000542002 KMT2BQ9UMN6 2715 aaPredicted RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 CCDC188H7C350 402 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 PRMT5O14744 637 aaPredicted RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 LIN7AO14910 233 aaPredicted RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 HGSO14964 777 aaPredicted RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 RAD51CO43502 376 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 PRAMEF10O60809 474 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 GPC4O75487 556 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 NDUFS3O75489 264 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 SEC31AO94979 1220 aaKnown RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 ITGA2BP08514 1039 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 SLC35G4P0C7Q5 338 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 OR56A5P0C7T3 313 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 RBMS1P29558 406 aaKnown RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 RPL21P46778 160 aaKnown RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 CAPZBP47756 277 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 CD151P48509 253 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 TTPAP49638 278 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 ITGA8P53708 1063 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 MAPK10P53779 464 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 C2orf54Q08AI8 447 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 RPA4Q13156 261 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 PRKG2Q13237 762 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 EIF3IQ13347 325 aaKnown RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 CTBP1Q13363 440 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 TRA2AQ13595 282 aaKnown RBP eCLIP9.48□□□□□ -0.892e-6■■■■■ 27.7
YBX3-212ENST00000542002 BOP1Q14137 746 aaKnown RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 TYSND1Q2T9J0 566 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 ZNF549Q6P9A3 640 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 FAM92BQ6ZTR7 304 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 SYDE1Q6ZW31 735 aaPredicted RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 PDZD3Q86UT5 571 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 HOOK3Q86VS8 718 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 CILP2Q8IUL8 1156 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 LMNTD1Q8N9Z9 388 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 AVL9Q8NBF6 648 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 OR5AR1Q8NGP9 310 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 ZFPM2Q8WW38 1151 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 TFGQ92734 400 aaPredicted RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.48□□□□□ -0.89
YBX3-212ENST00000542002 ZNF669Q96BR6 464 aaPredicted RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 STAMBPL1Q96FJ0 436 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 C16orf45Q96MC5 204 aaPredicted RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 TTC1Q99614 292 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 EBNA1BP2Q99848 306 aaKnown RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 DPYSL5Q9BPU6 564 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 XKR8Q9H6D3 395 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 APMAPQ9HDC9 416 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 EPHA6Q9UF33 1036 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 ANAPC5Q9UJX4 755 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 RALYQ9UKM9 306 aaKnown RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 CRYL1Q9Y2S2 319 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 MED16Q9Y2X0 877 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 FAM169AQ9Y6X4 670 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 MN1Q10571 1320 aaPredicted RBP9.48□□□□□ -0.89
YBX3-212ENST00000542002 EPG5Q9HCE0 2579 aa9.48□□□□□ -0.89
YBX3-212ENST00000542002 UNC13CQ8NB66 2214 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 IGHV5-51A0A0C4DH38 117 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 OR6C74A6NCV1 312 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 OR5K3A6NET4 321 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 EFCAB7A8K855 629 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 BTN3A3O00478 584 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 NVLO15381 856 aaKnown RBP9.47□□□□□ -0.89
YBX3-212ENST00000542002 EFSO43281 561 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 NIPSNAP2O75323 286 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 USP1O94782 785 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 HAUS5O94927 633 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 SLCO2B1O94956 709 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 FTH1P02794 183 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 GSTM1P09488 218 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 JMJD7P0C870 316 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 ERVK-10P10266 1014 aa9.47□□□□□ -0.89
YBX3-212ENST00000542002 RPS3P23396 243 aaKnown RBP eCLIP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms