RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 PCDHB9Q9Y5E1 797 aa11.77□□□□□ -0.53
CLIP1-208ENST00000537004 CAPN14A8MX76 684 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 A8MX80 341 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 TSPAN6O43657 245 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 FZD6O60353 706 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 CHRNGP07510 517 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 SERPINA6P08185 405 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 PRSS56P0CW18 603 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 AKT2P31751 481 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 SLC26A3P40879 764 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 IDH3AP50213 366 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 MNAT1P51948 309 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 ALDH18A1P54886 795 aaKnown RBP11.76□□□□□ -0.53
CLIP1-208ENST00000537004 ASPHQ12797 758 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 SGCGQ13326 291 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 PTPRRQ15256 657 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 TPRG1LQ5T0D9 272 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 KIAA1161Q6NSJ0 714 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 TMEM207Q6UWW9 146 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 Q6ZSR6 202 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 PARP9Q8IXQ6 854 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 RAB7BQ96AH8 199 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 RAB3IPQ96QF0 476 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-208ENST00000537004 ILKAPQ9H0C8 392 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-208ENST00000537004 CDH19Q9H159 772 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 INTS10Q9NVR2 710 aaKnown RBP11.76□□□□□ -0.53
CLIP1-208ENST00000537004 HACD3Q9P035 362 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 DKK3Q9UBP4 350 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 APOBEC2Q9Y235 224 aaKnown RBP11.76□□□□□ -0.53
CLIP1-208ENST00000537004 STK38LQ9Y2H1 464 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 TMEM131Q92545 1883 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 PCDHGA12O60330 932 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 RBP1P09455 135 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 CALB2P22676 271 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 XPAP23025 273 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-208ENST00000537004 ATP5F1P24539 256 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-208ENST00000537004 PTPN4P29074 926 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 NUDT1P36639 197 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 CCR10P46092 362 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 EPHB1P54762 984 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 TIAL1Q01085 375 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLIP1-208ENST00000537004 ACAP2Q15057 778 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 ARL13AQ5H913 290 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-208ENST00000537004 CFAP157Q5JU67 520 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 VWA5B1Q5TIE3 1220 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 ABI3BPQ7Z7G0 1075 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 TTC30BQ8N4P2 665 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 AGR3Q8TD06 166 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 SAP25Q8TEE9 199 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 UTP4Q969X6 686 aaKnown RBP11.76□□□□□ -0.53
CLIP1-208ENST00000537004 TBC1D10AQ9BXI6 508 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 ATP13A3Q9H7F0 1226 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 MBNL1Q9NR56 388 aaKnown RBP11.76□□□□□ -0.53
CLIP1-208ENST00000537004 FKBPLQ9UIM3 349 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 RAP2CQ9Y3L5 183 aa11.76□□□□□ -0.53
CLIP1-208ENST00000537004 MAP1BP46821 2468 aaKnown RBP11.75□□□□□ -0.53
CLIP1-208ENST00000537004 UBA6A0AVT1 1052 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-208ENST00000537004 STX7O15400 261 aaKnown RBP11.75□□□□□ -0.53
CLIP1-208ENST00000537004 FLRT2O43155 660 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 HYAL3O43820 417 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-208ENST00000537004 DIAPH2O60879 1101 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 PGLSO95336 258 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 ESRRAP11474 423 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-208ENST00000537004 MPSTP25325 297 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 SERPINA4P29622 427 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 BCL2L1Q07817 233 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 ARMC12Q5T9G4 340 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 SLCO6A1Q86UG4 719 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 IQCHQ86VS3 1027 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 TREML1Q86YW5 311 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 PAF1Q8N7H5 531 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 CCNYL1Q8N7R7 359 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 BAHD1Q8TBE0 780 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-208ENST00000537004 CXorf40AQ8TE69 158 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 LPGAT1Q92604 370 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 ZNF641Q96N77 438 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-208ENST00000537004 TCF12Q99081 682 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 AARSD1Q9BTE6 412 aaKnown RBP11.75□□□□□ -0.53
CLIP1-208ENST00000537004 CCDC106Q9BWC9 280 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 COG4Q9H9E3 785 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 POPDC3Q9HBV1 291 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 BPIFA1Q9NP55 256 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 WASF3Q9UPY6 502 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 ZNF711Q9Y462 761 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 PCDHGB2Q9Y5G2 931 aa11.75□□□□□ -0.53
CLIP1-208ENST00000537004 A0A0U1RQS6 177 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 NEMP2A6NFY4 417 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 NDUFS3O75489 264 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 FTH1P19P0C7X4 201 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 TFEBP19484 476 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 EPHA8P29322 1005 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 MC4RP32245 332 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 CSNK1DP48730 415 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 ARRB1P49407 418 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 CDKN1CP49918 316 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 RPL14P50914 215 aaKnown RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 SUOXP51687 545 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 DNAJB13P59910 316 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 PRKAA1Q13131 559 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms