RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PREPP48147 710 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 PLOD1Q02809 727 aaPredicted RBP12.66□□□□□ -0.38
VPS28-216ENST00000533806 DHX9Q08211 1270 aaKnown RBP12.66□□□□□ -0.38
VPS28-216ENST00000533806 BOP1Q14137 746 aaKnown RBP12.66□□□□□ -0.38
VPS28-216ENST00000533806 PHF19Q5T6S3 580 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 MRNIPQ6NTE8 343 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 DUS1LQ6P1R4 473 aaKnown RBP12.66□□□□□ -0.38
VPS28-216ENST00000533806 CASC4Q6P4E1 433 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 PDZD3Q86UT5 571 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 LRRC6Q86X45 466 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 FBXO39Q8N4B4 442 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 BMPERQ8N8U9 685 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 RCBTB1Q8NDN9 531 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 ELMO1Q92556 727 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 RSC1A1Q92681 617 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 FGF11Q92914 225 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 STAMBPL1Q96FJ0 436 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 AHCYL2Q96HN2 611 aaKnown RBP12.66□□□□□ -0.38
VPS28-216ENST00000533806 PWWP2AQ96N64 755 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 CMKLR1Q99788 373 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 EBNA1BP2Q99848 306 aaKnown RBP12.66□□□□□ -0.38
VPS28-216ENST00000533806 B3GNT4Q9C0J1 378 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 IL1RAPL1Q9NZN1 696 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 SAMD15Q9P1V8 674 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 SLC24A2Q9UI40 661 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 ACSL6Q9UKU0 697 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 SSUH2Q9Y2M2 353 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 LOXL2Q9Y4K0 774 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 PCDHGA7Q9Y5G6 932 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 CHD6Q8TD26 2715 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 NBEAQ8NFP9 2946 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 FAM187AA6NFU0 413 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 NVLO15381 856 aaKnown RBP12.65□□□□□ -0.38
VPS28-216ENST00000533806 TOX3O15405 576 aaPredicted RBP12.65□□□□□ -0.38
VPS28-216ENST00000533806 BANF1O75531 89 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 SLCO2B1O94956 709 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 TNFSF15O95150 251 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 TPBGLP0DKB5 382 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 FGF3P11487 239 aaPredicted RBP12.65□□□□□ -0.38
VPS28-216ENST00000533806 CCL4P13236 92 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 PAMP19021 973 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 ITIH1P19827 911 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 NDUFS1P28331 727 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 EIF2S3P41091 472 aaKnown RBP12.65□□□□□ -0.38
VPS28-216ENST00000533806 ETV5P41161 510 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 ITGA8P53708 1063 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 GFERP55789 205 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 MRPS25P82663 173 aaKnown RBP12.65□□□□□ -0.38
VPS28-216ENST00000533806 ZNF789Q5FWF6 425 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 CTSL3PQ5NE16 218 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 DUPD1Q68J44 220 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 NAPRTQ6XQN6 538 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 SDCCAG8Q86SQ7 713 aaPredicted RBP12.65□□□□□ -0.38
VPS28-216ENST00000533806 PLXDC1Q8IUK5 500 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 VRK3Q8IV63 474 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 SLC22A15Q8IZD6 547 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 AGBL5Q8NDL9 886 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 TFGQ92734 400 aaPredicted RBP12.65□□□□□ -0.38
VPS28-216ENST00000533806 ZNF669Q96BR6 464 aaPredicted RBP12.65□□□□□ -0.38
VPS28-216ENST00000533806 SNF8Q96H20 258 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 C9orf72Q96LT7 481 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 C16orf45Q96MC5 204 aaPredicted RBP12.65□□□□□ -0.38
VPS28-216ENST00000533806 ERP44Q9BS26 406 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 LATS2Q9NRM7 1088 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 CDC23Q9UJX2 597 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 HEBP2Q9Y5Z4 205 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 MAD1L1Q9Y6D9 718 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 TEX264Q9Y6I9 313 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 COLEC10Q9Y6Z7 277 aa12.65□□□□□ -0.38
VPS28-216ENST00000533806 EFCAB8A8MWE9 144 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 E7ESA3 106 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 CAPN5O15484 640 aaPredicted RBP12.64□□□□□ -0.39
VPS28-216ENST00000533806 RAD51CO43502 376 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 NDUFS3O75489 264 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 TTC4O95801 387 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 PGAM1P18669 254 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 RBMS1P29558 406 aaKnown RBP12.64□□□□□ -0.39
VPS28-216ENST00000533806 MAPK9P45984 424 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 RPL21P46778 160 aaKnown RBP12.64□□□□□ -0.39
VPS28-216ENST00000533806 LEPRP48357 1165 aaKnown RBP12.64□□□□□ -0.39
VPS28-216ENST00000533806 C2orf54Q08AI8 447 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 GBX1Q14549 363 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 CRYMQ14894 314 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 BRD3Q15059 726 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 LONRF1Q17RB8 773 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 DNAJC21Q5F1R6 531 aaKnown RBP12.64□□□□□ -0.39
VPS28-216ENST00000533806 RNF187Q5TA31 235 aaPredicted RBP12.64□□□□□ -0.39
VPS28-216ENST00000533806 MAATS1Q7Z4T9 603 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 LMNTD2Q8IXW0 634 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 UNC5BQ8IZJ1 945 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 KRT222Q8N1A0 295 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.64□□□□□ -0.39
VPS28-216ENST00000533806 PHC3Q8NDX5 983 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 ACVR1CQ8NER5 493 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 ASZ1Q8WWH4 475 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 JPH3Q8WXH2 748 aaPredicted RBP12.64□□□□□ -0.39
VPS28-216ENST00000533806 KLHL6Q8WZ60 621 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 LRRC39Q96DD0 335 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 NRTNQ99748 197 aa12.64□□□□□ -0.39
VPS28-216ENST00000533806 NAT9Q9BTE0 207 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms