RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 FAM90A7PA6NKC0 464 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 FAM90A22PA8MWA6 464 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 FAM90A12PA8MX19 464 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 FAM90A23PA8MXZ1 464 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 TEX28O15482 410 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 BAG4O95429 457 aaKnown RBP7.02□□□□□ -1.29
CSDE1-213ENST00000530784 CHRM4P08173 479 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 CTPS1P17812 591 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 AOC1P19801 751 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 TRAF3Q13114 568 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 CAPSQ13938 189 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 CTTNQ14247 550 aaKnown RBP7.02□□□□□ -1.29
CSDE1-213ENST00000530784 MXD4Q14582 209 aaPredicted RBP7.02□□□□□ -1.29
CSDE1-213ENST00000530784 CAPRIN2Q6IMN6 1127 aaKnown RBP7.02□□□□□ -1.29
CSDE1-213ENST00000530784 CYP26C1Q6V0L0 522 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 ASCL5Q7RTU5 278 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 PATL1Q86TB9 770 aaKnown RBP7.02□□□□□ -1.29
CSDE1-213ENST00000530784 HACE1Q8IYU2 909 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 RNF168Q8IYW5 571 aaPredicted RBP7.02□□□□□ -1.29
CSDE1-213ENST00000530784 MCPH1Q8NEM0 835 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 SH3KBP1Q96B97 665 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 ZSCAN31Q96LW9 406 aaPredicted RBP7.02□□□□□ -1.29
CSDE1-213ENST00000530784 CCDC43Q96MW1 224 aaKnown RBP7.02□□□□□ -1.29
CSDE1-213ENST00000530784 GAD1Q99259 594 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 TRIM6Q9C030 488 aaPredicted RBP7.02□□□□□ -1.29
CSDE1-213ENST00000530784 XPNPEP1Q9NQW7 623 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 TRIOO75962 3097 aa7.02□□□□□ -1.29
CSDE1-213ENST00000530784 CLUHO75153 1309 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 MYH9P35579 1960 aaKnown RBP7.01□□□□□ -1.29
CSDE1-213ENST00000530784 DENND4AQ7Z401 1863 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 IGHV4-28A0A0C4DH34 117 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 PRR23AA6NEV1 266 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 SH2D7A6NKC9 451 aaPredicted RBP7.01□□□□□ -1.29
CSDE1-213ENST00000530784 ACOT8O14734 319 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 FGF3P11487 239 aaPredicted RBP7.01□□□□□ -1.29
CSDE1-213ENST00000530784 ZNF12P17014 697 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 KRT2P35908 639 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 CENPAP49450 140 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 PTENP60484 403 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 MBTD1Q05BQ5 628 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 ZNF354CQ86Y25 554 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 CCDC105Q8IYK2 499 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 CNOT9Q92600 299 aaKnown RBP7.01□□□□□ -1.29
CSDE1-213ENST00000530784 CPB2Q96IY4 423 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 RTP3Q9BQQ7 232 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 REEP2Q9BRK0 252 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 APOL6Q9BWW8 343 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 CDT1Q9H211 546 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 NXF3Q9H4D5 531 aaKnown RBP7.01□□□□□ -1.29
CSDE1-213ENST00000530784 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.01□□□□□ -1.29
CSDE1-213ENST00000530784 HES2Q9Y543 173 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 DGKBQ9Y6T7 804 aa7.01□□□□□ -1.29
CSDE1-213ENST00000530784 PFKFB2O60825 505 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 N4BP1O75113 896 aaKnown RBP7□□□□□ -1.29
CSDE1-213ENST00000530784 RFPL2O75678 378 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 SLITRK3O94933 977 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 LYPLA2O95372 231 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 ARF4P18085 180 aaPredicted RBP7□□□□□ -1.29
CSDE1-213ENST00000530784 POU5F1BQ06416 359 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 TRAF2Q12933 501 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 GRIK3Q13003 919 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 CALCRLQ16602 461 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 FUT10Q6P4F1 479 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 SLC27A1Q6PCB7 646 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 IL20RBQ6UXL0 311 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 PRSS45Q7RTY3 260 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 MON1AQ86VX9 555 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 DCP1BQ8IZD4 617 aaKnown RBP7□□□□□ -1.29
CSDE1-213ENST00000530784 ZMIZ2Q8NF64 920 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 LMO3Q8TAP4 145 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 RAB40AQ8WXH6 277 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 ZNF707Q96C28 371 aaPredicted RBP7□□□□□ -1.29
CSDE1-213ENST00000530784 RNF183Q96D59 192 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 B3GALT6Q96L58 329 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 EIF2AK1Q9BQI3 630 aaKnown RBP7□□□□□ -1.29
CSDE1-213ENST00000530784 NFKBIZQ9BYH8 718 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 POLR3FQ9H1D9 316 aaPredicted RBP7□□□□□ -1.29
CSDE1-213ENST00000530784 PLEKHA4Q9H4M7 779 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 SLC32A1Q9H598 525 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 CLK4Q9HAZ1 481 aaKnown RBP7□□□□□ -1.29
CSDE1-213ENST00000530784 ANKEF1Q9NU02 776 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 EPS15L1Q9UBC2 864 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 ORC3Q9UBD5 711 aaPredicted RBP7□□□□□ -1.29
CSDE1-213ENST00000530784 ADAM28Q9UKQ2 775 aa7□□□□□ -1.29
CSDE1-213ENST00000530784 SF3B1O75533 1304 aaKnown RBP eCLIP7□□□□□ -1.29
CSDE1-213ENST00000530784 LRRIQ4A6NIV6 560 aa6.99□□□□□ -1.29
CSDE1-213ENST00000530784 PRSS44E7EML9 344 aa6.99□□□□□ -1.29
CSDE1-213ENST00000530784 B4GALT5O43286 388 aa6.99□□□□□ -1.29
CSDE1-213ENST00000530784 PI15O43692 258 aa6.99□□□□□ -1.29
CSDE1-213ENST00000530784 NEMFO60524 1076 aa6.99□□□□□ -1.29
CSDE1-213ENST00000530784 USO1O60763 962 aaKnown RBP6.99□□□□□ -1.29
CSDE1-213ENST00000530784 CTDNEP1O95476 244 aa6.99□□□□□ -1.29
CSDE1-213ENST00000530784 FCGR1AP12314 374 aa6.99□□□□□ -1.29
CSDE1-213ENST00000530784 GLRA2P23416 452 aa6.99□□□□□ -1.29
CSDE1-213ENST00000530784 TTKP33981 857 aa6.99□□□□□ -1.29
CSDE1-213ENST00000530784 ARL2P36404 184 aa6.99□□□□□ -1.29
CSDE1-213ENST00000530784 ADORA2A-AS1P86434 159 aa6.99□□□□□ -1.29
CSDE1-213ENST00000530784 FAM27E3Q08E93 113 aa6.99□□□□□ -1.29
CSDE1-213ENST00000530784 BIRC3Q13489 604 aa6.99□□□□□ -1.29
CSDE1-213ENST00000530784 TRIM29Q14134 588 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms