RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 GOLPH3Q9H4A6 298 aa13.88□□□□□ -0.19
CPSF1-201ENST00000526271 CASS4Q9NQ75 786 aa13.88□□□□□ -0.19
CPSF1-201ENST00000526271 ACSS2Q9NR19 701 aa13.88□□□□□ -0.19
CPSF1-201ENST00000526271 LATS2Q9NRM7 1088 aa13.88□□□□□ -0.19
CPSF1-201ENST00000526271 FAM8A1Q9UBU6 413 aa13.88□□□□□ -0.19
CPSF1-201ENST00000526271 POMT2Q9UKY4 750 aa13.88□□□□□ -0.19
CPSF1-201ENST00000526271 NTNG1Q9Y2I2 539 aa13.88□□□□□ -0.19
CPSF1-201ENST00000526271 LUC7L2Q9Y383 392 aaKnown RBP13.88□□□□□ -0.19
CPSF1-201ENST00000526271 DNMT3AQ9Y6K1 912 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-201ENST00000526271 OTOGQ6ZRI0 2925 aa13.88□□□□□ -0.19
CPSF1-201ENST00000526271 ZGRF1Q86YA3 2104 aa13.88□□□□□ -0.19
CPSF1-201ENST00000526271 SVILO95425 2214 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 UBA6A0AVT1 1052 aaPredicted RBP13.87□□□□□ -0.19
CPSF1-201ENST00000526271 MGAT4DA6NG13 374 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 A6NL46 340 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 RAB40ALP0C0E4 278 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 DCTP40126 519 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 GABRA4P48169 554 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 MARCKSL1P49006 195 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 LMAN1P49257 510 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 RPS15P62841 145 aaKnown RBP13.87□□□□□ -0.19
CPSF1-201ENST00000526271 ATP1A4Q13733 1029 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 GTF2H3Q13889 308 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 LDLRAP1Q5SW96 308 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 RFX6Q8HWS3 928 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 EFCAB3Q8N7B9 438 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 BLOC1S5Q8TDH9 187 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 SNRNP40Q96DI7 357 aaKnown RBP13.87□□□□□ -0.19
CPSF1-201ENST00000526271 FCRL5Q96RD9 977 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 SMAD5Q99717 465 aaKnown RBP13.87□□□□□ -0.19
CPSF1-201ENST00000526271 NLNQ9BYT8 704 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 KLHL25Q9H0H3 589 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 ZBTB20Q9HC78 741 aaPredicted RBP13.87□□□□□ -0.19
CPSF1-201ENST00000526271 SPTLC3Q9NUV7 552 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 HAUS2Q9NVX0 235 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 FKBPLQ9UIM3 349 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 CSMD2Q7Z408 3487 aa13.87□□□□□ -0.19
CPSF1-201ENST00000526271 PDZD2O15018 2839 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 ANKRD17O75179 2603 aaKnown RBP13.86□□□□□ -0.19
CPSF1-201ENST00000526271 BTN3A1O00481 513 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 PPP1R12AO14974 1030 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-201ENST00000526271 CBX6O95503 412 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 AGTP01019 485 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 EPOP01588 193 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 PRSS56P0CW18 603 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 TPBGLP0DKB5 382 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 VCLP18206 1134 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 ADRA1AP35348 466 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 CDKN1CP49918 316 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-201ENST00000526271 XRCC4Q13426 336 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 TRIM14Q14142 442 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 BCL7AQ4VC05 210 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 ZFYVE27Q5T4F4 411 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 GLT6D1Q7Z4J2 308 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 OOSP2Q86WS3 158 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 SYTL1Q8IYJ3 562 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 IPMKQ8NFU5 416 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 OR4E2Q8NGC2 313 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 OR2L2Q8NH16 312 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 FLVCR1-AS1Q8TAF5 88 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 ZNF398Q8TD17 642 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 CTNNBL1Q8WYA6 563 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-201ENST00000526271 LINC00615Q96LM1 132 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-201ENST00000526271 DNAJC7Q99615 494 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 PITPNM3Q9BZ71 974 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 OR52A5Q9H2C5 316 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 TRABDQ9H4I3 376 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 FAM60AQ9NP50 221 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 ASF1BQ9NVP2 202 aa13.86□□□□□ -0.19
CPSF1-201ENST00000526271 CUEDC1Q9NWM3 386 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-201ENST00000526271 SSU72P8A0A1W2PR75 194 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 TMEM150CB9EJG8 249 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 CCL22O00626 93 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 CST8O60676 142 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 PRAMEF1O95521 474 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 POLBP06746 335 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 CBSLP0DN79 551 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 COMTP21964 271 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 PDHA2P29803 388 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 PRDX3P30048 256 aaKnown RBP13.85□□□□□ -0.19
CPSF1-201ENST00000526271 CBSP35520 551 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 VAV2P52735 878 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 NCF4Q15080 339 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 NR6A1Q15406 480 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 ZIC1Q15915 447 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 PPP2R5EQ16537 467 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 LRRC38Q5VT99 294 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 CDHR3Q6ZTQ4 885 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 ZC3H18Q86VM9 953 aaKnown RBP13.85□□□□□ -0.19
CPSF1-201ENST00000526271 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.85□□□□□ -0.19
CPSF1-201ENST00000526271 TFB1MQ8WVM0 346 aaKnown RBP13.85□□□□□ -0.19
CPSF1-201ENST00000526271 SEC14L1Q92503 715 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 PNPLA2Q96AD5 504 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 HAUS1Q96CS2 278 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 TRAPPC9Q96Q05 1148 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 BARD1Q99728 777 aaKnown RBP13.85□□□□□ -0.19
CPSF1-201ENST00000526271 SNX7Q9UNH6 387 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 ZNF451Q9Y4E5 1061 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 CSAG2Q9Y5P2 127 aa13.85□□□□□ -0.19
CPSF1-201ENST00000526271 SRP72O76094 671 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms