RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.11□□□□□ -1.27
SDCBP-208ENST00000520228 RAB20Q9NX57 234 aa7.11□□□□□ -1.27
SDCBP-208ENST00000520228 GDE1Q9NZC3 331 aa7.11□□□□□ -1.27
SDCBP-208ENST00000520228 DTX4Q9Y2E6 619 aa7.11□□□□□ -1.27
SDCBP-208ENST00000520228 MUC3AQ02505 3323 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 E5RJQ4 531 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 ANHXE9PGG2 379 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 USP12O75317 370 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 MBD3O95983 291 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 PRR35P0CG20 571 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 CCDC192P0DO97 292 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 LYL1P12980 280 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 CEBPBP17676 345 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 ATF6P18850 670 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 TFEBP19484 476 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 BDNFP23560 247 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 CCR2P41597 374 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 MAGEA11P43364 429 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 NDST1P52848 882 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 SLC12A2P55011 1212 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 CETN1Q12798 172 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 TDGQ13569 410 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 THOC5Q13769 683 aaKnown RBP7.1□□□□□ -1.27
SDCBP-208ENST00000520228 TPD52L1Q16890 204 aaPredicted RBP7.1□□□□□ -1.27
SDCBP-208ENST00000520228 DPCR1Q3MIW9 517 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 CBWD6Q4V339 395 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 CBWD3Q5JTY5 395 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 CBWD5Q5RIA9 395 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 SDHAF4Q5VUM1 108 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 LIPMQ5VYY2 423 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 MTFR2Q6P444 385 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 DEF8Q6ZN54 512 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 MTSS1LQ765P7 747 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 ACOT1Q86TX2 421 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 UNC93AQ86WB7 457 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 TMC8Q8IU68 726 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 CREBRFQ8IUR6 639 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 SCN4BQ8IWT1 228 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 UBALD2Q8IYN6 164 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 FAM47BQ8NA70 645 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 MYLPFQ96A32 169 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 PCED1BQ96HM7 432 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 SIGLEC11Q96RL6 698 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 HDHD5Q9BXW7 423 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 DNAI2Q9GZS0 605 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 CLPBQ9H078 707 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 DPEP3Q9H4B8 488 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 NOD2Q9HC29 1040 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 COQ4Q9Y3A0 265 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 NME7Q9Y5B8 376 aa7.1□□□□□ -1.27
SDCBP-208ENST00000520228 KCNJ18B7U540 433 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 MOSPD3O75425 235 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 CD63P08962 238 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 CSH1P0DML2 217 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 CSH2P0DML3 217 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 GJA1P17302 382 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 HOXB9P17482 250 aaPredicted RBP7.09□□□□□ -1.27
SDCBP-208ENST00000520228 CD58P19256 250 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 TRIM21P19474 475 aaKnown RBP7.09□□□□□ -1.27
SDCBP-208ENST00000520228 ANXA13P27216 316 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 GABRR2P28476 465 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 CDC25CP30307 473 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 AVPR2P30518 371 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 ARHGAP25P42331 645 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 FMO5P49326 533 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 SIGLEC14Q08ET2 396 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 INCA1Q0VD86 236 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 HTR4Q13639 388 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 TEAD2Q15562 447 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 FAM78AQ5JUQ0 283 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 TMEM31Q5JXX7 168 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 SASS6Q6UVJ0 657 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 PARM1Q6UWI2 310 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 BBS12Q6ZW61 710 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 LRRTM4Q86VH4 590 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 TMEM200AQ86VY9 491 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 ZNF575Q86XF7 245 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 CRYBG2Q8N1P7 616 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 TTC39CQ8N584 583 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 FAM110DQ8TAY7 271 aaPredicted RBP7.09□□□□□ -1.27
SDCBP-208ENST00000520228 FGF14Q92915 247 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 SPATA17Q96L03 361 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 CEP295NLQ96MC4 621 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 GCNAQ96QF7 691 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 PIMREGQ9BSJ6 248 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 MED10Q9BTT4 135 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 RPP25Q9BUL9 199 aaKnown RBP7.09□□□□□ -1.27
SDCBP-208ENST00000520228 GPR88Q9GZN0 384 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 ELOVL4Q9GZR5 314 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 ZNF334Q9HCZ1 680 aaPredicted RBP7.09□□□□□ -1.27
SDCBP-208ENST00000520228 RRN3Q9NYV6 651 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 MYH11P35749 1972 aa7.09□□□□□ -1.27
SDCBP-208ENST00000520228 TDRD15B5MCY1 1934 aaKnown RBP7.09□□□□□ -1.27
SDCBP-208ENST00000520228 ATP8B3O60423 1300 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 TMEM221A6NGB7 291 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 F8VP50 259 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 M0R296 226 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 CLDN5O00501 218 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 NCAM2O15394 837 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 P4HA2O15460 535 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms