RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 LMAN1P49257 510 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 GSDMDP57764 484 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 PPP1CAP62136 330 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 CDH17Q12864 832 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 PRKAA1Q13131 559 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 RPA4Q13156 261 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 TUBB3Q13509 450 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 LAMB3Q13751 1172 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 TMTC4Q5T4D3 741 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 DUS1LQ6P1R4 473 aaKnown RBP12.42□□□□□ -0.42
PTPRF-214ENST00000496043 C16orf46Q6P387 395 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 CARFQ8N187 725 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 LILRA3Q8N6C8 439 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-214ENST00000496043 DNAAF3Q8N9W5 541 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 ACVR1CQ8NER5 493 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 LCN9Q8WX39 176 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 STARD8Q92502 1023 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 RMDN2Q96LZ7 410 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 ETNK1Q9HBU6 452 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 PIH1D1Q9NWS0 290 aaKnown RBP12.42□□□□□ -0.42
PTPRF-214ENST00000496043 SMARCAL1Q9NZC9 954 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 LNPEPQ9UIQ6 1025 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 KCND3Q9UK17 655 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 CROTQ9UKG9 612 aa12.42□□□□□ -0.42
PTPRF-214ENST00000496043 MROH6A6NGR9 719 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 E7EVH7 732 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 QSOX1O00391 747 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 LIASO43766 372 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 KATNA1O75449 491 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 ZBTB11O95625 1053 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-214ENST00000496043 IFNB1P01574 187 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 PRSS56P0CW18 603 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 POLR2CP19387 275 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-214ENST00000496043 NSG1P42857 185 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 POLE2P56282 527 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 CDC20Q12834 499 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 KCNAB2Q13303 367 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 KCNAB1Q14722 419 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 RPS6KA1Q15418 735 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 DEFB109BQ30KR1 87 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 PWWP2BQ6NUJ5 590 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 PPP1R21Q6ZMI0 780 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 PRICKLE2Q7Z3G6 844 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 SLC13A5Q86YT5 568 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-214ENST00000496043 PIANPQ8IYJ0 282 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 D2HGDHQ8N465 521 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 CLDN19Q8N6F1 224 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 PHC3Q8NDX5 983 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 OR52K1Q8NGK4 314 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 OR8K5Q8NH50 307 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 APOBEC4Q8WW27 367 aaKnown RBP12.41□□□□□ -0.42
PTPRF-214ENST00000496043 ATG4AQ8WYN0 398 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 RNF31Q96EP0 1072 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 TTC1Q99614 292 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 OR52A5Q9H2C5 316 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 SRMSQ9H3Y6 488 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 MVB12BQ9H7P6 319 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 COG4Q9H9E3 785 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 FGF21Q9NSA1 209 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 KCND1Q9NSA2 647 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 TUBD1Q9UJT1 453 aa12.41□□□□□ -0.42
PTPRF-214ENST00000496043 HEATR9A2RTY3 570 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 MATN2O00339 956 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 MAP3K7O43318 606 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 SUN1O94901 812 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 RECKO95980 971 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 EBLN1P0CF75 366 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 F8A1P23610 371 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 ADRA1DP25100 572 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 MSNP26038 577 aaKnown RBP12.4□□□□□ -0.42
PTPRF-214ENST00000496043 PDHA2P29803 388 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 KPNA2P52292 529 aaKnown RBP12.4□□□□□ -0.42
PTPRF-214ENST00000496043 TUBB4BP68371 445 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 SNX1Q13596 522 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 TUBB2AQ13885 445 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 ITIH4Q14624 930 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 OASLQ15646 514 aaKnown RBP12.4□□□□□ -0.42
PTPRF-214ENST00000496043 DBN1Q16643 649 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 CCDC38Q502W7 563 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 MEI1Q5TIA1 1274 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 LYPLAL1Q5VWZ2 237 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 CERS6Q6ZMG9 384 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 ATG14Q6ZNE5 492 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 C1orf54Q8WWF1 131 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 TFGQ92734 400 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-214ENST00000496043 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.4□□□□□ -0.42
PTPRF-214ENST00000496043 TUBB2BQ9BVA1 445 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 TFB2MQ9H5Q4 396 aaKnown RBP12.4□□□□□ -0.42
PTPRF-214ENST00000496043 LHX9Q9NQ69 397 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 C1GALT1Q9NS00 363 aa12.4□□□□□ -0.42
PTPRF-214ENST00000496043 MRPS18BQ9Y676 258 aaKnown RBP12.4□□□□□ -0.42
PTPRF-214ENST00000496043 PIEZO2Q9H5I5 2752 aa12.39□□□□□ -0.43
PTPRF-214ENST00000496043 ZNF462Q96JM2 2506 aa12.39□□□□□ -0.43
PTPRF-214ENST00000496043 CCDC78A2IDD5 438 aa12.39□□□□□ -0.43
PTPRF-214ENST00000496043 CCDC162PA2VCL2 907 aa12.39□□□□□ -0.43
PTPRF-214ENST00000496043 SLC9B1P1A6NJY1 282 aa12.39□□□□□ -0.43
PTPRF-214ENST00000496043 C21orf140B9A014 251 aa12.39□□□□□ -0.43
PTPRF-214ENST00000496043 F8W8V4 182 aa12.39□□□□□ -0.43
PTPRF-214ENST00000496043 TERTO14746 1132 aaKnown RBP12.39□□□□□ -0.43
PTPRF-214ENST00000496043 LIN7AO14910 233 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms