RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 FUT4P22083 530 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 IGFBP5P24593 272 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 MS4A2Q01362 244 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 CREMQ03060 361 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 PTPRCAPQ14761 206 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 MED22Q15528 200 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 FGD3Q5JSP0 725 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 NAPRTQ6XQN6 538 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 UBE2R2Q712K3 238 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 METTL3Q86U44 580 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 CAMKK1Q8N5S9 505 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 ZNF614Q8N883 585 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 SIDT2Q8NBJ9 832 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 HERC2P3Q9BVR0 1158 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 CLEC4MQ9H2X3 399 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 BRD9Q9H8M2 597 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 KNL1Q8NG31 2342 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 HTR3EA5X5Y0 456 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 MS4A13Q5J8X5 152 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 SIRPB2Q5JXA9 342 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 ZNF549Q6P9A3 640 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 ATG10Q9H0Y0 220 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 EHD1Q9H4M9 534 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 TRPV5Q9NQA5 729 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 RGS17Q9UGC6 210 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 A0A1W2PRU2 124 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 SOCS7O14512 581 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 CDKL1Q00532 357 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 DAG1Q14118 895 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 QPRTQ15274 297 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 COLEC12Q5KU26 742 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 ADGRF1Q5T601 910 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 MUC13Q9H3R2 512 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 KAT8Q9H7Z6 458 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 FLRT1Q9NZU1 646 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 SCML2Q9UQR0 700 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 BMP10O95393 424 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 IL7RP16871 459 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 POLD2P49005 469 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 AFF1P51825 1210 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 CYP2A13Q16696 494 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 TYSND1Q2T9J0 566 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 FAM91A1Q658Y4 838 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 PAQR3Q6TCH7 311 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 SERPINA9Q86WD7 417 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 RAB43Q86YS6 212 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 MINDY2Q8NBR6 621 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 PTPN18Q99952 460 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 IPPKQ9H8X2 491 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 EIF2B4Q9UI10 523 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 YIPF1Q9Y548 306 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 MTMR11A4FU01 709 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 OR2AG2A6NM03 316 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 GABBR2O75899 941 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 CD97P48960 835 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 IST1P53990 364 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 FCHO2Q0JRZ9 810 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 MADCAM1Q13477 382 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 NEK5Q6P3R8 708 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 CERS6Q6ZMG9 384 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 CENPIQ92674 756 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 MS4A4AQ96JQ5 239 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 CHCHD6Q9BRQ6 235 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 YTHDF1Q9BYJ9 559 aaKnown RBP16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 AHSPQ9NZD4 102 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 A0A1W2PQ45 241 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 A0A1W2PQY0 241 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 CARNS1A5YM72 827 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 H3BN98 237 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 ACADMP11310 421 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 LCP2Q13094 533 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 GPR17Q13304 367 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 MARCH8Q5T0T0 291 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 PIM3Q86V86 326 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 OOSP2Q86WS3 158 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 CHPFQ8IZ52 775 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 LTBP4Q8N2S1 1624 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 CDKN2AIPNLQ96HQ2 116 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 RNF38Q9H0F5 515 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 NIPSNAP2O75323 286 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 OR4F21O95013 312 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 ARL4DP49703 201 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 ARMC8Q8IUR7 673 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 GPR62Q9BZJ7 368 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 CERS4Q9HA82 394 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 POLR3BQ9NW08 1133 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 H2AFY2Q9P0M6 372 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 CCRL2O00421 344 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 ENPP3O14638 875 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 EPN2O95208 641 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 CACNG1Q06432 222 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 SULT2A1Q06520 285 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 TAB1Q15750 504 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 RPS27LQ71UM5 84 aaKnown RBP16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 ANKLE1Q8NAG6 615 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 CXorf40AQ8TE69 158 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 FEM1CQ96JP0 617 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 OR52E6Q96RD3 313 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 POLE4Q9NR33 117 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms