RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 PFDN6O15212 129 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 THRAP10827 490 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 OGNP20774 298 aaKnown RBP14.41□□□□□ -0.1
USP4-212ENST00000486549 FMO4P31512 558 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 LSSP48449 732 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 LIMK2P53671 638 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 RPA4Q13156 261 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 CRYMQ14894 314 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 C16orf72Q14CZ0 275 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 HIF1AQ16665 826 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 LONRF1Q17RB8 773 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 TYSND1Q2T9J0 566 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 RNF187Q5TA31 235 aaPredicted RBP14.41□□□□□ -0.1
USP4-212ENST00000486549 CAPRIN2Q6IMN6 1127 aaKnown RBP14.41□□□□□ -0.1
USP4-212ENST00000486549 TMEM71Q6P5X7 295 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 UNC5BQ8IZJ1 945 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 FBXO39Q8N4B4 442 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.41□□□□□ -0.1
USP4-212ENST00000486549 RSC1A1Q92681 617 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 FGF11Q92914 225 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 TMEM159Q96B96 161 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 CFAP36Q96G28 342 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 FERD3LQ96RJ6 166 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 EBNA1BP2Q99848 306 aaKnown RBP14.41□□□□□ -0.1
USP4-212ENST00000486549 DPYSL5Q9BPU6 564 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 ERP44Q9BS26 406 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 P2RY12Q9H244 342 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 EPB41L1Q9H4G0 881 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 OGFRQ9NZT2 677 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 PISDQ9UG56 409 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 CHMP2BQ9UQN3 213 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 CRYL1Q9Y2S2 319 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 FAM208BQ5VWN6 2430 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 ACACAQ13085 2346 aa14.41□□□□□ -0.1
USP4-212ENST00000486549 APC2O95996 2303 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 SMAPO00193 183 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 PLD2O14939 933 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 JMJD7P0C870 316 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 RPS3P23396 243 aaKnown RBP eCLIP14.4□□□□□ -0.1
USP4-212ENST00000486549 RBMS1P29558 406 aaKnown RBP14.4□□□□□ -0.1
USP4-212ENST00000486549 CCR7P32248 378 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 ELK3P41970 407 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 CAPZBP47756 277 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 GFERP55789 205 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 ARL4CP56559 192 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 HSPA14Q0VDF9 509 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 CALCOCO2Q13137 446 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 EIF3IQ13347 325 aaKnown RBP14.4□□□□□ -0.1
USP4-212ENST00000486549 CTBP1Q13363 440 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 SQSTM1Q13501 440 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 WHAMMP3Q1A5X7 153 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 CTSL3PQ5NE16 218 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 WDR74Q6RFH5 385 aaPredicted RBP14.4□□□□□ -0.1
USP4-212ENST00000486549 CENPUQ71F23 418 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 ZNF572Q7Z3I7 529 aaPredicted RBP14.4□□□□□ -0.1
USP4-212ENST00000486549 PDZD3Q86UT5 571 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 KCNMB4Q86W47 210 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 LRRC6Q86X45 466 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 CILP2Q8IUL8 1156 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 IGDCC3Q8IVU1 814 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 DENND6AQ8IWF6 608 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 PHC3Q8NDX5 983 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 SNIP1Q8TAD8 396 aaKnown RBP14.4□□□□□ -0.1
USP4-212ENST00000486549 LPGAT1Q92604 370 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 FAM136AQ96C01 138 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 ZNF578Q96N58 590 aaPredicted RBP14.4□□□□□ -0.1
USP4-212ENST00000486549 TGM7Q96PF1 710 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 CARD6Q9BX69 1037 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 FBXO6Q9NRD1 293 aaPredicted RBP14.4□□□□□ -0.1
USP4-212ENST00000486549 AKAP7Q9P0M2 348 aaPredicted RBP14.4□□□□□ -0.1
USP4-212ENST00000486549 HEBP2Q9Y5Z4 205 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 FAM169AQ9Y6X4 670 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 COLEC10Q9Y6Z7 277 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 CFAP47Q6ZTR5 3102 aa14.4□□□□□ -0.1
USP4-212ENST00000486549 PKD1L2Q7Z442 2459 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 CHD6Q8TD26 2715 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 ZZEF1O43149 2961 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 SLC5A10A0PJK1 596 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 KIF2AO00139 706 aaPredicted RBP14.39□□□□□ -0.11
USP4-212ENST00000486549 NDC80O14777 642 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 TNFSF15O95150 251 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 ITIH1P19827 911 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 SLC1A2P43004 574 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 ABCG1P45844 678 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 CD151P48509 253 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 MAPK10P53779 464 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 ERVPABLB-1P60509 514 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 TMED2Q15363 201 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 HSP90AA5PQ58FG0 334 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 ZNF789Q5FWF6 425 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 SPANXN3Q5MJ09 141 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 IRGCQ6NXR0 463 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 ANKMY2Q8IV38 441 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 BBOF1Q8ND07 529 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 TFGQ92734 400 aaPredicted RBP14.39□□□□□ -0.11
USP4-212ENST00000486549 PANX3Q96QZ0 392 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 TCF12Q99081 682 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 CMKLR1Q99788 373 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 FAM167BQ9BTA0 163 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 HGH1Q9BTY7 390 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms