RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TXLNBQ8N3L3 684 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 ESX1Q8N693 406 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 STARD8Q92502 1023 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 CCM2Q9BSQ5 444 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 CROTQ9UKG9 612 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 SPTA1P02549 2419 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 TLCD2A6NGC4 264 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 RALBP11234 206 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 CACNG1Q06432 222 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 TUBB3Q13509 450 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 SEMA5AQ13591 1074 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 SNX1Q13596 522 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 DNTTIP2Q5QJE6 756 aaKnown RBP13.73□□□□□ -0.21
UPF3A-204ENST00000475218 BORAQ6PGQ7 559 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 C6orf15Q6UXA7 325 aaPredicted RBP13.73□□□□□ -0.21
UPF3A-204ENST00000475218 D2HGDHQ8N465 521 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 PHC3Q8NDX5 983 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 HEXDCQ8WVB3 486 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 RUFY1Q96T51 708 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 CD180Q99467 661 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 ARHGAP9Q9BRR9 750 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 TRIT1Q9H3H1 467 aaKnown RBP13.73□□□□□ -0.21
UPF3A-204ENST00000475218 CASS4Q9NQ75 786 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 GEMIN8Q9NWZ8 242 aaKnown RBP13.73□□□□□ -0.21
UPF3A-204ENST00000475218 CFAP99D6REC4 459 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 BTN3A3O00478 584 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 PSMD3O43242 534 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 TPBGLP0DKB5 382 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 MSNP26038 577 aaKnown RBP13.72□□□□□ -0.21
UPF3A-204ENST00000475218 STIP1P31948 543 aaKnown RBP13.72□□□□□ -0.21
UPF3A-204ENST00000475218 ACVR1Q04771 509 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 SEL1L2Q5TEA6 688 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 KLHL35Q6PF15 583 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 ZNF534Q76KX8 674 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 TAS2R42Q7RTR8 314 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 OOSP2Q86WS3 158 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 PPP1R3BQ86XI6 285 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 RASGRP3Q8IV61 690 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 SIDT2Q8NBJ9 832 aaKnown RBP13.72□□□□□ -0.21
UPF3A-204ENST00000475218 OR4E2Q8NGC2 313 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 TSGA10Q9BZW7 698 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 POMT2Q9UKY4 750 aa13.72□□□□□ -0.21
UPF3A-204ENST00000475218 SPENQ96T58 3664 aaKnown RBP13.71□□□□□ -0.21
UPF3A-204ENST00000475218 SPTBP11277 2137 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 J3QKU1 62 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 ARHGAP6O43182 974 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 IFNB1P01574 187 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 POLR2CP19387 275 aaPredicted RBP13.71□□□□□ -0.21
UPF3A-204ENST00000475218 RPL22P35268 128 aaKnown RBP13.71□□□□□ -0.21
UPF3A-204ENST00000475218 DLSTP36957 453 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 POLE2P56282 527 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 GSDMDP57764 484 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 CCZ1BP86790 482 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 CCZ1P86791 482 aaPredicted RBP13.71□□□□□ -0.21
UPF3A-204ENST00000475218 LAMB3Q13751 1172 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 BOP1Q14137 746 aaKnown RBP13.71□□□□□ -0.21
UPF3A-204ENST00000475218 SEMA3AQ14563 771 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 GPR19Q15760 415 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 PACS1Q6VY07 963 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 NAPRTQ6XQN6 538 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 ZNF662Q6ZS27 426 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 KMT5CQ86Y97 462 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 SLC38A9Q8NBW4 561 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 ACVR1CQ8NER5 493 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 HDAC10Q969S8 669 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 KIAA1143Q96AT1 154 aaPredicted RBP13.71□□□□□ -0.21
UPF3A-204ENST00000475218 FRMD8P1Q9BZ68 369 aaPredicted RBP13.71□□□□□ -0.21
UPF3A-204ENST00000475218 TWSG1Q9GZX9 223 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 FGF21Q9NSA1 209 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 SMARCAL1Q9NZC9 954 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 LNPEPQ9UIQ6 1025 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 ZNF148Q9UQR1 794 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 MYO18BQ8IUG5 2567 aa13.71□□□□□ -0.21
UPF3A-204ENST00000475218 COL12A1Q99715 3063 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 ERI2A8K979 691 aaKnown RBP13.71□□□□□ -0.22
UPF3A-204ENST00000475218 BHMG1C9JSJ3 638 aaPredicted RBP13.71□□□□□ -0.22
UPF3A-204ENST00000475218 BTN3A1O00481 513 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 KRT86O43790 486 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 OR1I1O60431 355 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 ACADLP28330 430 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 CD151P48509 253 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 HSD11B2P80365 405 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 CDH17Q12864 832 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 RPS6KA1Q15418 735 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 CRTC2Q53ET0 693 aaPredicted RBP13.71□□□□□ -0.22
UPF3A-204ENST00000475218 TSTD2Q5T7W7 516 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 LINC00523Q86TU6 105 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 OR52E1Q8NGJ3 308 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 CT55Q8WUE5 264 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 LRRC45Q96CN5 670 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 ZNF501Q96CX3 271 aaPredicted RBP13.71□□□□□ -0.22
UPF3A-204ENST00000475218 RANBP9Q96S59 729 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 TLR10Q9BXR5 811 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 RAB6BQ9NRW1 208 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 BTRCQ9Y297 605 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 COLEC10Q9Y6Z7 277 aa13.71□□□□□ -0.22
UPF3A-204ENST00000475218 SLC5A10A0PJK1 596 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 AP2A2O94973 939 aa13.7□□□□□ -0.22
UPF3A-204ENST00000475218 GOT2P00505 430 aaKnown RBP13.7□□□□□ -0.22
UPF3A-204ENST00000475218 NTRK1P04629 796 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms