RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	MIOS	Q9NXC5	875 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	ZHX1	Q9UKY1	873 aa	Predicted RBP	3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	SMCHD1	A6NHR9	2005 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	SCN5A	Q14524	2016 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	EDDM13	A0A1B0GTR0	161 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	XRCC3	O43542	346 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	SPRY1	O43609	319 aa	Predicted RBP	3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	BAG4	O95429	457 aa	Known RBP	3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	GGPS1	O95749	300 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	IGHV4-39	P01824	125 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	LIPF	P07098	398 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	H1F0	P07305	194 aa	Known RBP	3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	CCDC175	P0C221	793 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	OR2T7	P0C7T2	308 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	GABRA5	P31644	462 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	HOXA1	P49639	335 aa	Predicted RBP	3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	RAB28	P51157	221 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	LIMK1	P53667	647 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	DUOXA1	Q1HG43	343 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	C1orf141	Q5JVX7	400 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	SPECC1	Q5M775	1068 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	STXBP5	Q5T5C0	1151 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	NDUFAF5	Q5TEU4	345 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	CCDC186	Q7Z3E2	898 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	PIWIL4	Q7Z3Z4	852 aa	Known RBP	3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	KRT77	Q7Z794	578 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	IQCH	Q86VS3	1027 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	TICAM2	Q86XR7	235 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	GPALPP1	Q8IXQ4	340 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	RFLNB	Q8N5W9	214 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	OR2AJ1	Q8NGZ0	328 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	SECTM1	Q8WVN6	248 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	TEKT4	Q8WW24	435 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	DAZL	Q92904	295 aa	Known RBP	3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	SLAMF9	Q96A28	289 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	SCRN2	Q96FV2	425 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	OXNAD1	Q96HP4	312 aa	Predicted RBP	3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	LINC00615	Q96LM1	132 aa	Predicted RBP	3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	C17orf77	Q96MU5	243 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	LRRC3B	Q96PB8	259 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	LMF2	Q9BU23	707 aa	Known RBP	3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	POLR3C	Q9BUI4	534 aa	Predicted RBP	3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	ABHD6	Q9BV23	337 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	AP1M1	Q9BXS5	423 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	DPAGT1	Q9H3H5	408 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	ZNF556	Q9HAH1	456 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044	TRPC7	Q9HCX4	862 aa		3.63	□□□□□ -1.83
PTCD3-209	ENST00000472044		A0A1W2PPI3	338 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044		A0A1W2PPM1	405 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	MED19	A0JLT2	244 aa	Predicted RBP	3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	EME2	A4GXA9	379 aa	Predicted RBP	3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	URAD	A6NGE7	173 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	ZNF500	O60304	480 aa	Predicted RBP	3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	CTSV	O60911	334 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	KRT36	O76013	467 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	QDPR	P09417	244 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	DGKA	P23743	735 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	DNASE1	P24855	282 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	TKT	P29401	623 aa	Known RBP	3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	MC5R	P33032	325 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	SLC9A3	P48764	834 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	ZNF41	P51814	821 aa	Predicted RBP	3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	ZNF75D	P51815	510 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	PRKCZ	Q05513	592 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	HSPB3	Q12988	150 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	PLA2G7	Q13093	441 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	KIR2DS3	Q14952	304 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	PSMD6	Q15008	389 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	LETM2	Q2VYF4	491 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	ASPRV1	Q53RT3	343 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	PDSS1	Q5T2R2	415 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	LCE1A	Q5T7P2	110 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	ZNF852	Q6ZMS4	543 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	NFE4	Q86UQ8	179 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	LONP2	Q86WA8	852 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	CEP57L1	Q8IYX8	460 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	CPSF7	Q8N684	471 aa	Known RBP	3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	METTL27	Q8N6F8	245 aa	Predicted RBP	3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	POC1A	Q8NBT0	407 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	PPFIBP2	Q8ND30	876 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	SPATA20	Q8TB22	786 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	NXNL1	Q96CM4	212 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	HDAC11	Q96DB2	347 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	SLC25A23	Q9BV35	468 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	ABCF3	Q9NUQ8	709 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	TUBE1	Q9UJT0	475 aa		3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	SOS1	Q07889	1333 aa	Predicted RBP	3.62	□□□□□ -1.83
PTCD3-209	ENST00000472044	IGLV5-45	A0A087WSX0	123 aa		3.61	□□□□□ -1.83
PTCD3-209	ENST00000472044	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		3.61	□□□□□ -1.83
PTCD3-209	ENST00000472044		A0A0B4J293	547 aa		3.61	□□□□□ -1.83
PTCD3-209	ENST00000472044		A0A1W2PPQ1	181 aa		3.61	□□□□□ -1.83
PTCD3-209	ENST00000472044	PTGES	O14684	152 aa		3.61	□□□□□ -1.83
PTCD3-209	ENST00000472044	TADA2A	O75478	443 aa		3.61	□□□□□ -1.83
PTCD3-209	ENST00000472044	C22orf31	O95567	290 aa		3.61	□□□□□ -1.83
PTCD3-209	ENST00000472044	KRT19	P08727	400 aa		3.61	□□□□□ -1.83
PTCD3-209	ENST00000472044	TGFB3	P10600	412 aa		3.61	□□□□□ -1.83
PTCD3-209	ENST00000472044	PCGF2	P35227	344 aa		3.61	□□□□□ -1.83
PTCD3-209	ENST00000472044	MTHFR	P42898	656 aa		3.61	□□□□□ -1.83
PTCD3-209	ENST00000472044	NR2C2	P49116	596 aa		3.61	□□□□□ -1.83
PTCD3-209	ENST00000472044	ERVFC1-1	P60608	527 aa		3.61	□□□□□ -1.83

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