RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 EVA1BQ9NVM1 165 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 CACNG4Q9UBN1 327 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 A0A0G2JPF8 293 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ABHD14A-ACY1A0A1B0GW23 586 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 HNRNPCL3B7ZW38 293 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 I3L521 148 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 EI24O14681 340 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 HMGB3O15347 200 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 PLOD3O60568 738 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 RFPL2O75678 378 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 C2P06681 752 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 OR4Q2P0C623 313 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 HNRNPCL4P0DMR1 293 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 RHOQP17081 205 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 CTGFP29279 349 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 HLCSP50747 726 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ATXN1P54253 815 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 PSMD4P55036 377 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 FAM189BP81408 668 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 GPR17Q13304 367 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 RAB41Q5JT25 222 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 DDI2Q5TDH0 399 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ANKRD22Q5VYY1 191 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 TPGS2Q68CL5 300 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 NEPROQ6NW34 567 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 BHLHB9Q6PI77 547 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 EPGNQ6UW88 154 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 TREML1Q86YW5 311 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 DNAJB8Q8NHS0 232 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 FAM136AQ96C01 138 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 FOPNLQ96NB1 174 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 DCSTAMPQ9H295 470 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 SYNDIG1Q9H7V2 258 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 NECTIN3Q9NQS3 549 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 EXD2Q9NVH0 621 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 SPG21Q9NZD8 308 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 COMMD9Q9P000 198 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 SIRPGQ9P1W8 387 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 AFF4Q9UHB7 1163 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ABCG2Q9UNQ0 655 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 PLCL2Q9UPR0 1127 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 SIP14410 1827 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 OR6C70A6NIJ9 312 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 NR2F6P10588 404 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 PEPDP12955 493 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 IL7P13232 177 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 CD72P21854 359 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 RORCP51449 518 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 NDST2P52849 883 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ATP6V0D1P61421 351 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 HIST2H2ACQ16777 129 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 HIST2H2AA3Q6FI13 130 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 Q6ZNX1 250 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 HFE2Q6ZVN8 426 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 CEP68Q76N32 757 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 LIMS2Q7Z4I7 341 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ZNF598Q86UK7 904 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 PTGR2Q8N8N7 351 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ANKFN1Q8N957 763 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ATAD1Q8NBU5 361 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 PTCD2Q8WV60 388 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 DIRAS2Q96HU8 199 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ITPAQ9BY32 194 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 GBA3Q9H227 469 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 SFMBT1Q9UHJ3 866 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ADGRE2Q9UHX3 823 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 MYO9BQ13459 2157 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 AURKAO14965 403 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 BEST1O76090 585 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 CPSF4O95639 269 aaKnown RBP6.1□□□□□ -1.43
VPS13D-202ENST00000460333 CD36P16671 472 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 PSMA3P25788 255 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 YBEYP58557 167 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-202ENST00000460333 RHAGQ02094 409 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 TAF10Q12962 218 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 NDUFAF6Q330K2 333 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 ZRANB3Q5FWF4 1079 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 ARL13AQ5H913 290 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-202ENST00000460333 MILR1Q7Z6M3 343 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 ZNF280BQ86YH2 543 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 TRPV3Q8NET8 790 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 LILRB4Q8NHJ6 448 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 NCSTNQ92542 709 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 GATA5Q9BWX5 397 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-202ENST00000460333 C12orf65Q9H3J6 166 aaKnown RBP6.1□□□□□ -1.43
VPS13D-202ENST00000460333 PAK6Q9NQU5 681 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-202ENST00000460333 PRDM8Q9NQV8 689 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 LRRC37A2A6NM11 1700 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 ARHGEF33A8MVX0 844 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 B8ZZF3 427 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 E7ESA3 106 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 E9PAM4 449 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 TOR1BO14657 336 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 TLR5O60602 858 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 CPNE3O75131 537 aaKnown RBP6.1□□□□□ -1.43
VPS13D-202ENST00000460333 IPO13O94829 963 aaKnown RBP6.1□□□□□ -1.43
VPS13D-202ENST00000460333 AP2A1O95782 977 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 HPRP00739 348 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 TFPTP0C1Z6 253 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 MBL2P11226 248 aaPredicted RBP6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms