RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 UNC45BQ8IWX7 931 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 CCDC170Q8IYT3 715 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 FBXL14Q8N1E6 418 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 NUP93Q8N1F7 819 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 CARNMT1Q8N4J0 409 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 TSPAN14Q8NG11 270 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 NUDCD2Q8WVJ2 157 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 TEKT4Q8WW24 435 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 LPGAT1Q92604 370 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 FAM162AQ96A26 154 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 HDAC11Q96DB2 347 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 CEP295NLQ96MC4 621 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 TCEANC2Q96MN5 208 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 NAP1L5Q96NT1 182 aaPredicted RBP4.11□□□□□ -1.75
VPS29-202ENST00000447578 PCGF1Q9BSM1 259 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 FAM129AQ9BZQ8 928 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 C2orf40Q9H1Z8 148 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 GOLPH3LQ9H4A5 285 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 AAMDCQ9H7C9 122 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 COPS7BQ9H9Q2 264 aaPredicted RBP4.11□□□□□ -1.75
VPS29-202ENST00000447578 TXLNGQ9NUQ3 528 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 MTMR10Q9NXD2 777 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 CRNNQ9UBG3 495 aaPredicted RBP4.11□□□□□ -1.75
VPS29-202ENST00000447578 AGO2Q9UKV8 859 aaKnown RBP4.11□□□□□ -1.75
VPS29-202ENST00000447578 ZNF148Q9UQR1 794 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 NFE2L3Q9Y4A8 694 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 ATP6V1DQ9Y5K8 247 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 MED23Q9ULK4 1368 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 CRYBG1Q9Y4K1 1723 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 SIPA1L3O60292 1781 aaPredicted RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 COL18A1P39060 1754 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 TUBGCP6Q96RT7 1819 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 TRAV34A0A0B4J273 112 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 EDDM13A0A1B0GTR0 161 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 LNP1A1A4G5 178 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 TMEM202A6NGA9 273 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 A6NNC1 897 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 H0YGN5 161 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 ATP2A1O14983 1001 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 PLRG1O43660 514 aaKnown RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 RSL1D1O76021 490 aaKnown RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 RECQL5O94762 991 aaPredicted RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 LETM1O95202 739 aaPredicted RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 ZWINTO95229 277 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 C22orf31O95567 290 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 MMP3P08254 477 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 GJA1P17302 382 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 MT3P25713 68 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 MSNP26038 577 aaKnown RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 HOXC13P31276 330 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 TNFSF8P32971 234 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 TCF7P36402 384 aaPredicted RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 ATP6V1E1P36543 226 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 CCR10P46092 362 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 GPR143P51810 404 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 CXCL9Q07325 125 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 KRT33BQ14525 404 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 E2F5Q15329 346 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 PNLIPRP3Q17RR3 467 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 MCMDC2Q4G0Z9 681 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 CBWD6Q4V339 395 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 CBWD3Q5JTY5 395 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 ARMC4Q5T2S8 1044 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 CCDC183Q5T5S1 534 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 SIGIRRQ6IA17 410 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 SUSD1Q6UWL2 747 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 RBPMS2Q6ZRY4 209 aaKnown RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 ERN2Q76MJ5 926 aaKnown RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 GET4Q7L5D6 327 aaPredicted RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 TSPAN33Q86UF1 283 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 FAM217AQ8IXS0 508 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 XXYLT1Q8NBI6 393 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 CEP76Q8TAP6 659 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 EME1Q96AY2 570 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 FAM84BQ96KN1 310 aaPredicted RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 PPP1R13BQ96KQ4 1090 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 NEK1Q96PY6 1258 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 NTPCRQ9BSD7 190 aaKnown RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 NUP85Q9BW27 656 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 RTN4RQ9BZR6 473 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 RBM38Q9H0Z9 239 aaKnown RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 DBNDD1Q9H9R9 158 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 PNRC2Q9NPJ4 139 aaKnown RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 DDX4Q9NQI0 724 aaKnown RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 RNF146Q9NTX7 359 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 HMG20BQ9P0W2 317 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 DDX25Q9UHL0 483 aaKnown RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 HACL1Q9UJ83 578 aa4.1□□□□□ -1.75
VPS29-202ENST00000447578 COL5A2P05997 1499 aaPredicted RBP4.1□□□□□ -1.75
VPS29-202ENST00000447578 KIR2DS5A0A0G2JLQ3 304 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 A0A1B0GUL7 405 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 MAGEB17A8MXT2 336 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 KIR2DS3K7RE56 304 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 VCYO14598 125 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 SPRY1O43609 319 aaPredicted RBP4.09□□□□□ -1.75
VPS29-202ENST00000447578 SYNCRIPO60506 623 aaKnown RBP4.09□□□□□ -1.75
VPS29-202ENST00000447578 TRUB2O95900 331 aaKnown RBP4.09□□□□□ -1.75
VPS29-202ENST00000447578 CHRNB1P11230 501 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 HOXC8P31273 242 aa4.09□□□□□ -1.75
VPS29-202ENST00000447578 KRT2P35908 639 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms