RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 NEU2Q9Y3R4 380 aa18.57■□□□□ 0.56
SF3A1-202ENST00000411423 JRKLQ9Y4A0 524 aa18.57■□□□□ 0.56
SF3A1-202ENST00000411423 KALRNO60229 2985 aa18.57■□□□□ 0.56
SF3A1-202ENST00000411423 PIKFYVEQ9Y2I7 2098 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 LOC101059948A0A1B0GTJ6 334 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 OR6C74A6NCV1 312 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 USP27XA6NNY8 438 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 ERVH48-1M5A8F1 160 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 POLR1CO15160 346 aaPredicted RBP18.56■□□□□ 0.56
SF3A1-202ENST00000411423 NRDCO43847 1150 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 STK17BO94768 372 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 TIAF1O95411 115 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 LIFP15018 202 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 FOLR1P15328 257 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 NELFEP18615 380 aaKnown RBP18.56■□□□□ 0.56
SF3A1-202ENST00000411423 MGAT1P26572 445 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 NSG1P42857 185 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 KPNA2P52292 529 aaKnown RBP18.56■□□□□ 0.56
SF3A1-202ENST00000411423 RHDQ02161 417 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 FOXM1Q08050 763 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 KCNJ11Q14654 390 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 GSE1Q14687 1217 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 BRD3Q15059 726 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 PCID2Q5JVF3 399 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 CACNA2D3Q8IZS8 1091 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 OR4L1Q8NH43 312 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 ZDHHC12Q96GR4 267 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 ELMO2Q96JJ3 720 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 SLC41A2Q96JW4 573 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 FERD3LQ96RJ6 166 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 HRASLS2Q9NWW9 162 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 SYBUQ9NX95 663 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 TRMT1Q9NXH9 659 aaKnown RBP18.56■□□□□ 0.56
SF3A1-202ENST00000411423 TMEM184BQ9Y519 407 aaPredicted RBP18.56■□□□□ 0.56
SF3A1-202ENST00000411423 PCDHB11Q9Y5F2 797 aa18.56■□□□□ 0.56
SF3A1-202ENST00000411423 SLC5A10A0PJK1 596 aa18.55■□□□□ 0.56
SF3A1-202ENST00000411423 BHMG1C9JSJ3 638 aaPredicted RBP18.55■□□□□ 0.56
SF3A1-202ENST00000411423 TMEM63AO94886 807 aa18.55■□□□□ 0.56
SF3A1-202ENST00000411423 GAS8O95995 478 aa18.55■□□□□ 0.56
SF3A1-202ENST00000411423 TPBGLP0DKB5 382 aa18.55■□□□□ 0.56
SF3A1-202ENST00000411423 ITGB6P18564 788 aa18.55■□□□□ 0.56
SF3A1-202ENST00000411423 POLR2CP19387 275 aaPredicted RBP18.55■□□□□ 0.56
SF3A1-202ENST00000411423 ARNTP27540 789 aa18.55■□□□□ 0.56
SF3A1-202ENST00000411423 LINC00303Q3SY05 128 aa18.55■□□□□ 0.56
SF3A1-202ENST00000411423 CES3Q6UWW8 571 aa18.55■□□□□ 0.56
SF3A1-202ENST00000411423 UNC5BQ8IZJ1 945 aa18.55■□□□□ 0.56
SF3A1-202ENST00000411423 PPHLN1Q8NEY8 458 aaKnown RBP18.55■□□□□ 0.56
SF3A1-202ENST00000411423 OR4E2Q8NGC2 313 aa18.55■□□□□ 0.56
SF3A1-202ENST00000411423 OR6P1Q8NGX9 317 aa18.55■□□□□ 0.56
SF3A1-202ENST00000411423 ZFPM2Q8WW38 1151 aa18.55■□□□□ 0.56
SF3A1-202ENST00000411423 TEFMQ96QE5 360 aaKnown RBP18.55■□□□□ 0.56
SF3A1-202ENST00000411423 TRIM56Q9BRZ2 755 aaKnown RBP18.55■□□□□ 0.56
SF3A1-202ENST00000411423 XKR8Q9H6D3 395 aa18.55■□□□□ 0.56
SF3A1-202ENST00000411423 IQCF5A8MTL0 148 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 BTN3A3O00478 584 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 ZNF185O15231 689 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 AVILO75366 819 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 EBLN1P0CF75 366 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 TPSB2P20231 275 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 ACADLP28330 430 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 CD151P48509 253 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 RPA4Q13156 261 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 PRKG2Q13237 762 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 BOP1Q14137 746 aaKnown RBP18.54■□□□□ 0.56
SF3A1-202ENST00000411423 LY6DQ14210 128 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 TPSAB1Q15661 275 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 CYP1B1Q16678 543 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 LRRC8BQ6P9F7 803 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 C4orf22Q6V702 233 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 OOSP2Q86WS3 158 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 MPP5Q8N3R9 675 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 IL22RA1Q8N6P7 574 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 ACVR1CQ8NER5 493 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 OR52E1Q8NGJ3 308 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 OR5AR1Q8NGP9 310 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 ELMO1Q92556 727 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 TFGQ92734 400 aaPredicted RBP18.54■□□□□ 0.56
SF3A1-202ENST00000411423 MAGOHBQ96A72 148 aaKnown RBP18.54■□□□□ 0.56
SF3A1-202ENST00000411423 MFSD3Q96ES6 412 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 SGSM3Q96HU1 749 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 PBKQ96KB5 322 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 OSBPL9Q96SU4 736 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 HGH1Q9BTY7 390 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 SLC12A9Q9BXP2 914 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 COLEC10Q9Y6Z7 277 aa18.54■□□□□ 0.56
SF3A1-202ENST00000411423 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.53■□□□□ 0.56
SF3A1-202ENST00000411423 BTN3A1O00481 513 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 KRT14P02533 472 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 FGF5P12034 268 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 NDUFS1P28331 727 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 CCR7P32248 378 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 COILP38432 576 aaPredicted RBP18.53■□□□□ 0.56
SF3A1-202ENST00000411423 MAGEA6P43360 314 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 ATP1A2P50993 1020 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 PRAMEP78395 509 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 GPS1Q13098 491 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 LAMB3Q13751 1172 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 COL9A2Q14055 689 aaPredicted RBP18.53■□□□□ 0.56
SF3A1-202ENST00000411423 DNTTIP2Q5QJE6 756 aaKnown RBP18.53■□□□□ 0.56
SF3A1-202ENST00000411423 NLRP9Q7RTR0 991 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms