RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 PDLIM5Q96HC4 596 aaKnown RBP17.7■□□□□ 0.42
SDC1-203ENST00000403076 FOPNLQ96NB1 174 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 SELENOSQ9BQE4 189 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 DERL2Q9GZP9 239 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 IGSF5Q9NSI5 407 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 SPASTQ9UBP0 616 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 GRID1Q9ULK0 1009 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 SLC6A14Q9UN76 642 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 SMG5Q9UPR3 1016 aaKnown RBP17.7■□□□□ 0.42
SDC1-203ENST00000403076 CDYLQ9Y232 598 aa17.7■□□□□ 0.42
SDC1-203ENST00000403076 TNRC6BQ9UPQ9 1833 aaKnown RBP17.69■□□□□ 0.42
SDC1-203ENST00000403076 H3BQF6 201 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 IFRD1O00458 451 aaPredicted RBP17.69■□□□□ 0.42
SDC1-203ENST00000403076 BTN3A1O00481 513 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 TSPAN12O95859 305 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 SLC35G4P0C7Q5 338 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 MPC1LP0DKB6 136 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 CD1DP15813 335 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 TFEBP19484 476 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 MPLP40238 635 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 CLCNKAP51800 687 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 ATP6V0D1P61421 351 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 TCF15Q12870 199 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 GBX1Q14549 363 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 ELOCQ15369 112 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 TRIM61Q5EBN2 209 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 LAIR1Q6GTX8 287 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 LCA5Q86VQ0 697 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 SLC22A15Q8IZD6 547 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 LMX1AQ8TE12 382 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 ATOH1Q92858 354 aaPredicted RBP17.69■□□□□ 0.42
SDC1-203ENST00000403076 IRF2BPLQ9H1B7 796 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 DPEP2Q9H4A9 486 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 CAAP1Q9H8G2 361 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 ERVMER34-1Q9H9K5 563 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 SSU72Q9NP77 194 aaKnown RBP17.69■□□□□ 0.42
SDC1-203ENST00000403076 DOLKQ9UPQ8 538 aa17.69■□□□□ 0.42
SDC1-203ENST00000403076 PATE3B3GLJ2 98 aa17.68■□□□□ 0.42
SDC1-203ENST00000403076 ZBTB14O43829 449 aa17.68■□□□□ 0.42
SDC1-203ENST00000403076 ARRB1P49407 418 aaPredicted RBP17.68■□□□□ 0.42
SDC1-203ENST00000403076 IRX4P78413 519 aa17.68■□□□□ 0.42
SDC1-203ENST00000403076 BNC1Q01954 994 aa17.68■□□□□ 0.42
SDC1-203ENST00000403076 ACAP2Q15057 778 aa17.68■□□□□ 0.42
SDC1-203ENST00000403076 N4BP2L1Q5TBK1 243 aaPredicted RBP17.68■□□□□ 0.42
SDC1-203ENST00000403076 C16orf46Q6P387 395 aa17.68■□□□□ 0.42
SDC1-203ENST00000403076 NEK10Q6ZWH5 1172 aa17.68■□□□□ 0.42
SDC1-203ENST00000403076 FSTL5Q8N475 847 aaPredicted RBP17.68■□□□□ 0.42
SDC1-203ENST00000403076 GPBAR1Q8TDU6 330 aa17.68■□□□□ 0.42
SDC1-203ENST00000403076 LRRC61Q9BV99 259 aa17.68■□□□□ 0.42
SDC1-203ENST00000403076 WWP1Q9H0M0 922 aa17.68■□□□□ 0.42
SDC1-203ENST00000403076 OR52A5Q9H2C5 316 aa17.68■□□□□ 0.42
SDC1-203ENST00000403076 PCDHGA5Q9Y5G8 931 aa17.68■□□□□ 0.42
SDC1-203ENST00000403076 NPEPPSL1A6NEC2 478 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 RBP1P09455 135 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 HALP42357 657 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 GRIK2Q13002 908 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 CCDC6Q16204 474 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 CYHR1Q6ZMK1 362 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 CDHR3Q6ZTQ4 885 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 NRROSQ86YC3 692 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 ANKRD42Q8N9B4 389 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 CCDC63Q8NA47 563 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 TCP10LQ8TDR4 215 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 ELF4Q99607 663 aaPredicted RBP17.67■□□□□ 0.42
SDC1-203ENST00000403076 NUSAP1Q9BXS6 441 aaKnown RBP17.67■□□□□ 0.42
SDC1-203ENST00000403076 ALG9Q9H6U8 611 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 FSCN3Q9NQT6 498 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 PRDM8Q9NQV8 689 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 MKS1Q9NXB0 559 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 NKIRAS1Q9NYS0 192 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 TMEM216Q9P0N5 145 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 ST14Q9Y5Y6 855 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 PI4KAP42356 2102 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 FANCMQ8IYD8 2048 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 TMEM120BA0PK00 339 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 PABPN1LA6NDY0 278 aaKnown RBP17.67■□□□□ 0.42
SDC1-203ENST00000403076 CDC7O00311 574 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 TYROBPO43914 113 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 SDC3O75056 442 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 CELA2BP08218 269 aaPredicted RBP17.67■□□□□ 0.42
SDC1-203ENST00000403076 SYPP08247 313 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 RPA3P35244 121 aaPredicted RBP17.67■□□□□ 0.42
SDC1-203ENST00000403076 TSNQ15631 228 aaKnown RBP17.67■□□□□ 0.42
SDC1-203ENST00000403076 SLC23A3Q6PIS1 610 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 LVRNQ6Q4G3 990 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 IL27RAQ6UWB1 636 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 XKR5Q6UX68 686 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 PDZD3Q86UT5 571 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 GKN2Q86XP6 184 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 SPDYE1Q8NFV5 336 aaPredicted RBP17.67■□□□□ 0.42
SDC1-203ENST00000403076 STAG3L4Q8TBR4 150 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 GPR78Q96P69 363 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 C12orf65Q9H3J6 166 aaKnown RBP17.67■□□□□ 0.42
SDC1-203ENST00000403076 SMOC1Q9H4F8 434 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 TFB2MQ9H5Q4 396 aaKnown RBP17.67■□□□□ 0.42
SDC1-203ENST00000403076 CAPN10Q9HC96 672 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 TAAR2Q9P1P5 351 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 TBC1D29Q9UFV1 150 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 GMEB2Q9UKD1 530 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 RNF112Q9ULX5 631 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms