RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 NSG1P42857 185 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 CCNHP51946 323 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 ERVK-8P63133 956 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 ATP13A5Q4VNC0 1218 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 DCAF12L1Q5VU92 463 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 TMEM110Q86TL2 294 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 GALNT15Q8N3T1 639 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 LIX1Q8N485 282 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 DNAJB8Q8NHS0 232 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 DCAKDQ8WVC6 231 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 FEM1AQ9BSK4 669 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 TMEM27Q9HBJ8 222 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 OXSMQ9NWU1 459 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 TUBA8Q9NY65 449 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 TLL2Q9Y6L7 1015 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 OR2AG2A6NM03 316 aa11.27□□□□□ -0.6
PTPRF-203ENST00000372407 BTN3A3O00478 584 aa11.27□□□□□ -0.6
PTPRF-203ENST00000372407 CKMT2P17540 419 aa11.27□□□□□ -0.6
PTPRF-203ENST00000372407 ITPKBP27987 946 aa11.27□□□□□ -0.6
PTPRF-203ENST00000372407 ABATP80404 500 aa11.27□□□□□ -0.6
PTPRF-203ENST00000372407 LAPTM5Q13571 262 aa11.27□□□□□ -0.6
PTPRF-203ENST00000372407 PTGES3Q15185 160 aaKnown RBP11.27□□□□□ -0.6
PTPRF-203ENST00000372407 FUT10Q6P4F1 479 aa11.27□□□□□ -0.6
PTPRF-203ENST00000372407 KLHL35Q6PF15 583 aa11.27□□□□□ -0.6
PTPRF-203ENST00000372407 KCTD8Q6ZWB6 473 aa11.27□□□□□ -0.6
PTPRF-203ENST00000372407 SATL1Q86VE3 508 aa11.27□□□□□ -0.6
PTPRF-203ENST00000372407 PHYKPLQ8IUZ5 450 aa11.27□□□□□ -0.6
PTPRF-203ENST00000372407 FUBP3Q96I24 572 aaKnown RBP eCLIP11.27□□□□□ -0.6
PTPRF-203ENST00000372407 C12orf42Q96LP6 360 aa11.27□□□□□ -0.6
PTPRF-203ENST00000372407 COL18A1P39060 1754 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 FAM234BA2RU67 622 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 M0R2N6 131 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 KLF11O14901 512 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 IRAK2O43187 625 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 DNTTP04053 509 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 PRNPP04156 253 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 LAG3P18627 525 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 STARP49675 285 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 CDH12P55289 794 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 ECT2LQ008S8 904 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 HEPACAMQ14CZ8 416 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 TOMM20Q15388 145 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 EZH1Q92800 747 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-203ENST00000372407 EXOSC8Q96B26 276 aaKnown RBP11.27□□□□□ -0.61
PTPRF-203ENST00000372407 FEM1CQ96JP0 617 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 PCDHAC1Q9H158 963 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 BCAS3Q9H6U6 928 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 CCDC177Q9NQR7 707 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-203ENST00000372407 CNTN3Q9P232 1028 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 WRAP73Q9P2S5 460 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-203ENST00000372407 TBC1D3DA0A087WVF3 549 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 TBC1D3IA0A087WXS9 549 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 TBC1D3EA0A087X179 549 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 TBC1D3KA0A087X1G2 549 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 TBC1D3FA6NER0 549 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-203ENST00000372407 ARL5CA6NH57 179 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 TBC1D3LB9A6J9 549 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 NDUFS2O75306 463 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 C8GP07360 202 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 TBC1D3HP0C7X1 549 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF12P17014 697 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 IMPDH1P20839 514 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 TYSND1Q2T9J0 566 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 SLC9B1Q4ZJI4 515 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 IFI44LQ53G44 452 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 VARS2Q5ST30 1063 aaKnown RBP11.27□□□□□ -0.61
PTPRF-203ENST00000372407 TBC1D3GQ6DHY5 549 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 TBC1D3CQ6IPX1 549 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 TBC1D3Q8IZP1 549 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-203ENST00000372407 TESMINQ9Y4I5 508 aa11.27□□□□□ -0.61
PTPRF-203ENST00000372407 EI24O14681 340 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 HCN1O60741 890 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 S100A9P06702 114 aaKnown RBP11.26□□□□□ -0.61
PTPRF-203ENST00000372407 SELPP16109 830 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 S100A1P23297 94 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 GRIA1P42261 906 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 PCDH1Q08174 1060 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 TAF1AQ15573 450 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-203ENST00000372407 TXNRD3NBQ6F5E7 133 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 CFAP206Q8IYR0 622 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF384Q8TF68 577 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 CLEC4CQ8WTT0 213 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 HIPK3Q9H422 1215 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 ZFP37Q9Y6Q3 630 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-203ENST00000372407 MCIDASD6RGH6 385 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 FGF19O95750 216 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 SPATA31D3P0C874 917 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 EEFSECP57772 596 aaKnown RBP11.26□□□□□ -0.61
PTPRF-203ENST00000372407 RAB15P59190 212 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 IL18Q14116 193 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 SOWAHAQ2M3V2 549 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 SPATA31D4Q6ZUB0 917 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 CHST15Q7LFX5 561 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-203ENST00000372407 ASB9Q96DX5 294 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF221Q9UK13 617 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 IKZF2Q9UKS7 526 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 TCRBV7S3A2A0A539 114 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 FAM159BA6NKW6 160 aa11.26□□□□□ -0.61
PTPRF-203ENST00000372407 hCG_2039718K7EN88 272 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms