RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 C1QL1O75973 258 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 STK17BO94768 372 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 AP2A2O94973 939 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 LIFP15018 202 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 NELFEP18615 380 aaKnown RBP17.91■□□□□ 0.46
CLN3-202ENST00000355477 ARCN1P48444 511 aaKnown RBP17.91■□□□□ 0.46
CLN3-202ENST00000355477 ATP1A2P50993 1020 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 SESN2P58004 480 aaPredicted RBP17.91■□□□□ 0.46
CLN3-202ENST00000355477 CYP4F2P78329 520 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 BASP1P80723 227 aaKnown RBP17.91■□□□□ 0.46
CLN3-202ENST00000355477 KRT33BQ14525 404 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 SEMA3AQ14563 771 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 ITIH4Q14624 930 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 TAF1BQ53T94 588 aaPredicted RBP17.91■□□□□ 0.46
CLN3-202ENST00000355477 KLHL35Q6PF15 583 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 C4orf22Q6V702 233 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 NAPRTQ6XQN6 538 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 IL22RA1Q8N6P7 574 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 OR6P1Q8NGX9 317 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 OR4L1Q8NH43 312 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 FERD3LQ96RJ6 166 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 MAP3K3Q99759 626 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 VPS37BQ9H9H4 285 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 HOMER3Q9NSC5 361 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 JRKLQ9Y4A0 524 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 HEBP2Q9Y5Z4 205 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 TCRBV7S3A2A0A539 114 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 ZNF28P17035 718 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 RPA4Q13156 261 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 COL9A2Q14055 689 aaPredicted RBP17.9■□□□□ 0.46
CLN3-202ENST00000355477 LY6DQ14210 128 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 TRIP13Q15645 432 aaPredicted RBP17.9■□□□□ 0.46
CLN3-202ENST00000355477 PCID2Q5JVF3 399 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 DNTTIP2Q5QJE6 756 aaKnown RBP17.9■□□□□ 0.46
CLN3-202ENST00000355477 TTC27Q6P3X3 843 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 AFTPHQ6ULP2 937 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 CERS6Q6ZMG9 384 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 NLRP9Q7RTR0 991 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 NLGN4XQ8N0W4 816 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 RASGEF1CQ8N431 466 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 PPHLN1Q8NEY8 458 aaKnown RBP17.9■□□□□ 0.46
CLN3-202ENST00000355477 NLGN4YQ8NFZ3 816 aaPredicted RBP17.9■□□□□ 0.46
CLN3-202ENST00000355477 OR4E2Q8NGC2 313 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 WBP1Q96G27 269 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 ELMO2Q96JJ3 720 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 SLC41A2Q96JW4 573 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 PPM1MQ96MI6 270 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 KCNF1Q9H3M0 494 aa17.9■□□□□ 0.46
CLN3-202ENST00000355477 LOC101059948A0A1B0GTJ6 334 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 GOLGA6L3A6NEY3 463 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 DLGAP3O95886 979 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 FOLR1P15328 257 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 POLR2CP19387 275 aaPredicted RBP17.89■□□□□ 0.45
CLN3-202ENST00000355477 NDUFS1P28331 727 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 CD151P48509 253 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 TERF1P54274 439 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 IL11RAQ14626 422 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 KCNAB1Q14722 419 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 BRD3Q15059 726 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 LYPLAL1Q5VWZ2 237 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 FBXO38Q6PIJ6 1188 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 LDB1Q86U70 411 aaPredicted RBP17.89■□□□□ 0.45
CLN3-202ENST00000355477 OOSP2Q86WS3 158 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 UNC5BQ8IZJ1 945 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 ACVR1CQ8NER5 493 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 ELMO1Q92556 727 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 UBXN4Q92575 508 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 PEX13Q92968 403 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 SGSM3Q96HU1 749 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 SLC12A9Q9BXP2 914 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 AP1M1Q9BXS5 423 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 SEMA4CQ9C0C4 833 aa17.89■□□□□ 0.45
CLN3-202ENST00000355477 TTC7AQ9ULT0 858 aaPredicted RBP17.89■□□□□ 0.45
CLN3-202ENST00000355477 IFRD1O00458 451 aaPredicted RBP17.88■□□□□ 0.45
CLN3-202ENST00000355477 GSTM1P09488 218 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 MAP4P27816 1152 aaKnown RBP17.88■□□□□ 0.45
CLN3-202ENST00000355477 NMBRP28336 390 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 NPY2RP49146 381 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 VPS41P49754 854 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 KPNA2P52292 529 aaKnown RBP17.88■□□□□ 0.45
CLN3-202ENST00000355477 PRAMEP78395 509 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 GSTM4Q03013 218 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 PRKG2Q13237 762 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 BOP1Q14137 746 aaKnown RBP17.88■□□□□ 0.45
CLN3-202ENST00000355477 LINC00303Q3SY05 128 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 FASTKD1Q53R41 847 aaKnown RBP17.88■□□□□ 0.45
CLN3-202ENST00000355477 SLC35F6Q8N357 371 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 ZSCAN1Q8NBB4 408 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 LCN9Q8WX39 176 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 TFGQ92734 400 aaPredicted RBP17.88■□□□□ 0.45
CLN3-202ENST00000355477 EXTL1Q92935 676 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.88■□□□□ 0.45
CLN3-202ENST00000355477 PBKQ96KB5 322 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 CD180Q99467 661 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 ULBP3Q9BZM4 244 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 TREX1Q9NSU2 369 aa17.88■□□□□ 0.45
CLN3-202ENST00000355477 MARCH4Q9P2E8 410 aaPredicted RBP17.88■□□□□ 0.45
CLN3-202ENST00000355477 SEC16AO15027 2179 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 UBA6A0AVT1 1052 aaPredicted RBP17.87■□□□□ 0.45
CLN3-202ENST00000355477 SLC5A10A0PJK1 596 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms