RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 ERP27Q96DN0 273 aa3.25□□□□□ -1.89
CSMD3-202ENST00000339701 ZHX1-C8orf76Q96EF9 292 aa3.25□□□□□ -1.89
CSMD3-202ENST00000339701 EBNA1BP2Q99848 306 aaKnown RBP3.25□□□□□ -1.89
CSMD3-202ENST00000339701 TRIM9Q9C026 710 aa3.25□□□□□ -1.89
CSMD3-202ENST00000339701 CCDC86Q9H6F5 360 aaKnown RBP3.25□□□□□ -1.89
CSMD3-202ENST00000339701 CLIC5Q9NZA1 410 aa3.25□□□□□ -1.89
CSMD3-202ENST00000339701 KIF25Q9UIL4 384 aa3.25□□□□□ -1.89
CSMD3-202ENST00000339701 CRLS1Q9UJA2 301 aa3.25□□□□□ -1.89
CSMD3-202ENST00000339701 FBXO9Q9UK97 447 aaPredicted RBP3.25□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF214Q9UL59 606 aaPredicted RBP3.25□□□□□ -1.89
CSMD3-202ENST00000339701 HEBP2Q9Y5Z4 205 aa3.25□□□□□ -1.89
CSMD3-202ENST00000339701 SLC35F4A4IF30 521 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 WRBO00258 174 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PITPNM1O00562 1244 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SLC30A4O14863 429 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FAM228BP0C875 321 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 HOXB9P17482 250 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 HRH2P25021 359 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 S100PP25815 95 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 NOVA1P51513 510 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ARSEP51690 589 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 EIPR1Q53HC9 387 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 DHFR2Q86XF0 187 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ADGRF2Q8IZF7 708 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 EDAQ92838 391 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TCEAL3Q969E4 200 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 GTPBP3Q969Y2 492 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 HPDLQ96IR7 371 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CSPG4P5Q96PW8 444 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PPP1R10Q96QC0 940 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 NDC1Q9BTX1 674 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 GSDMCQ9BYG8 508 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CELF4Q9BZC1 486 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 LRMDAQ9H2I8 198 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RNF39Q9H2S5 420 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 JMJD4Q9H9V9 463 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FBRSQ9HAH7 460 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PATZ1Q9HBE1 687 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 DPP3Q9NY33 737 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MAT2BQ9NZL9 334 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ITGA11Q9UKX5 1188 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PCDHB1Q9Y5F3 818 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TRIM49BA6NDI0 452 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FAM170BA6NMN3 283 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TRIM49D1C9J1S8 452 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 IFNA21P01568 189 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 IFNA6P05013 189 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PRPS2P11908 318 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ANXA8P13928 327 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CD53P19397 219 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RGS7P49802 495 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 NDUFA8P51970 172 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ADARP55265 1226 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MEF2AQ02078 507 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 KCNA1Q09470 495 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF268Q14587 947 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 NR6A1Q15406 480 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 LPAL2Q16609 132 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PSMG4Q5JS54 123 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 C1QTNF12Q5T7M4 302 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 OGFOD2Q6N063 350 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SLC27A1Q6PCB7 646 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CACUL1Q86Y37 369 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MB21D2Q8IYB1 491 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FAM3CQ92520 227 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SGCDQ92629 289 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 KAT2BQ92831 832 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ZDHHC12Q96GR4 267 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 BTBD10Q9BSF8 475 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FEM1AQ9BSK4 669 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 LRRC1Q9BTT6 524 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SEMA4CQ9C0C4 833 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 DENND2DQ9H6A0 471 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MRM3Q9HC36 420 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ABCB6Q9NP58 842 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PHPT1Q9NRX4 125 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 WBP1LQ9NX94 342 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 KLK14Q9P0G3 267 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FIS1Q9Y3D6 152 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 GRIP1Q9Y3R0 1128 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 DYRK1BQ9Y463 629 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TMEM120BA0PK00 339 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RTCAO00442 366 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CA3P07451 260 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 YES1P07947 543 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TSPAN19P0C672 248 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 HOXD8P13378 290 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 NCF1P14598 390 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 HSD17B3P37058 310 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SMSP52788 366 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 OGDHQ02218 1023 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 KCNC4Q03721 635 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 POU5F1BQ06416 359 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ITPRIPL2Q3MIP1 535 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MPP7Q5T2T1 576 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 GPRC6AQ5T6X5 926 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RPTNQ6XPR3 784 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CATSPERGQ6ZRH7 1159 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TPGS1Q6ZTW0 290 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RAB43Q86YS6 212 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms