RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PCDHB9Q9Y5E1 797 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 PCDHGB6Q9Y5F9 930 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 CACNB4O00305 520 aaPredicted RBP13.69□□□□□ -0.22
CSPG4-201ENST00000308508 AMHP03971 560 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 GRK6P43250 576 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 MECP2P51608 486 aaKnown RBP13.69□□□□□ -0.22
CSPG4-201ENST00000308508 MVKQ03426 396 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 TPRG1LQ5T0D9 272 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 NPHS1O60500 1241 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 PRPS2P11908 318 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 LIMK2P53671 638 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 KLHL26Q53HC5 615 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 SLC22A16Q86VW1 577 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 PACRGLQ8N7B6 248 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 TRPM4Q8TD43 1214 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 COQ8BQ96D53 544 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 NSMCE3Q96MG7 304 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 ABCD2Q9UBJ2 740 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF14P17017 642 aaPredicted RBP13.69□□□□□ -0.22
CSPG4-201ENST00000308508 TAS2R40P59535 323 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 CLCQ05315 142 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 BTG3Q14201 252 aaPredicted RBP13.69□□□□□ -0.22
CSPG4-201ENST00000308508 SF1Q15637 639 aaKnown RBP13.69□□□□□ -0.22
CSPG4-201ENST00000308508 XKR4Q5GH76 650 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 TMEM214Q6NUQ4 689 aaKnown RBP13.69□□□□□ -0.22
CSPG4-201ENST00000308508 PHYKPLQ8IUZ5 450 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 LIX1Q8N485 282 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 STYXQ8WUJ0 223 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 BRD7Q9NPI1 651 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF282Q9UDV7 671 aaPredicted RBP13.69□□□□□ -0.22
CSPG4-201ENST00000308508 ARPC4-TTLL3A0A0A6YYG9 625 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 HOXC12P31275 282 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 FMO3P31513 532 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 CERCAMQ5T4B2 595 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 PPP1R26Q5T8A7 1209 aaPredicted RBP13.69□□□□□ -0.22
CSPG4-201ENST00000308508 PAQR7Q86WK9 346 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 TIGD4Q8IY51 512 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 MYO19Q96H55 970 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 BPNT1O95861 308 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 PET100P0DJ07 73 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 MAP3K8P41279 467 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 TARDBPQ13148 414 aaKnown RBP eCLIP13.68□□□□□ -0.22
CSPG4-201ENST00000308508 ALG10Q5BKT4 473 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 OR10G6Q8NH81 332 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 GBA3Q9H227 469 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 PCDHGB5Q9Y5G0 923 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 TLX3O43711 291 aaPredicted RBP13.68□□□□□ -0.22
CSPG4-201ENST00000308508 CYP3A4P08684 503 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 POU2F1P14859 743 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 MRPS5P82675 430 aaKnown RBP13.68□□□□□ -0.22
CSPG4-201ENST00000308508 MPP1Q00013 466 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 GNA12Q03113 381 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 MOCS1Q9NZB8 636 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 SLIT1O75093 1534 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 GARNL3Q5VVW2 1013 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 FOXR2Q6PJQ5 311 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 SERPINA13PQ6UXR4 307 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 DEFB128Q7Z7B8 93 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 TDRPQ86YL5 185 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 ATG10Q9H0Y0 220 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 ZCCHC11Q5TAX3 1644 aaKnown RBP13.68□□□□□ -0.22
CSPG4-201ENST00000308508 USP31Q70CQ4 1352 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 POM121L1PQ3SYA9 428 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 POMZP3Q6PJE2 187 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 ILDR1Q86SU0 546 aaPredicted RBP13.68□□□□□ -0.22
CSPG4-201ENST00000308508 KAT2AQ92830 837 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 NEDD4LQ96PU5 975 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 RTFDC1Q9BY42 306 aaPredicted RBP13.68□□□□□ -0.22
CSPG4-201ENST00000308508 PDGFDQ9GZP0 370 aaPredicted RBP13.68□□□□□ -0.22
CSPG4-201ENST00000308508 OR51V1Q9H2C8 321 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 AGO3Q9H9G7 860 aaKnown RBP13.68□□□□□ -0.22
CSPG4-201ENST00000308508 MYH3P11055 1940 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 NAE1Q13564 534 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 MED27Q6P2C8 311 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 SLC30A10Q6XR72 485 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 IFT27Q9BW83 186 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 C1orf109Q9NX04 203 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 SEC14L4Q9UDX3 406 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 FAM155BO75949 473 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 KHKP50053 298 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 CACNG1Q06432 222 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 CERS6Q6ZMG9 384 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 LRRC55Q6ZSA7 311 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 PIGZQ86VD9 579 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 MCEMP1Q8IX19 187 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF781Q8N8C0 355 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 TMEM109Q9BVC6 243 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 ITPAQ9BY32 194 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 IPPKQ9H8X2 491 aa13.68□□□□□ -0.22
CSPG4-201ENST00000308508 RENP00797 406 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 SLC10A7Q0GE19 358 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 HEPACAMQ14CZ8 416 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 PARP15Q460N3 678 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 TEX44Q53QW1 395 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 EARS2Q5JPH6 523 aaKnown RBP13.67□□□□□ -0.22
CSPG4-201ENST00000308508 TESCQ96BS2 214 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 TUBA1CQ9BQE3 449 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 GLOD4Q9HC38 313 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 SPIN1Q9Y657 262 aaPredicted RBP13.67□□□□□ -0.22
CSPG4-201ENST00000308508 MYH15Q9Y2K3 1946 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms