RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 GREB1LQ9C091 1923 aaPredicted RBP15.15■□□□□ 0.02
SHH-201ENST00000297261 A0A1W2PQ45 241 aaPredicted RBP15.15■□□□□ 0.02
SHH-201ENST00000297261 A0A1W2PQY0 241 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 NDUFB5O43674 189 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 GNPDA1P46926 289 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 TTPAP49638 278 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 CXCR3P49682 368 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 CSNK2BP67870 215 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 MYBPC1Q00872 1141 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 KRT74Q7RTS7 529 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 APOLD1Q96LR9 279 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 CDK5RAP1Q96SZ6 601 aaKnown RBP15.15■□□□□ 0.02
SHH-201ENST00000297261 CXCL16Q9H2A7 254 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 SMOXQ9NWM0 555 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 GJD2Q9UKL4 321 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 ING4Q9UNL4 249 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 ARFGEF1Q9Y6D6 1849 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 BEST1O76090 585 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 AP2A2O94973 939 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 PAICSP22234 425 aaKnown RBP15.15■□□□□ 0.02
SHH-201ENST00000297261 DGKAP23743 735 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 GCAP28676 217 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 SCNN1AP37088 669 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 GSTM5P46439 218 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 BNC1Q01954 994 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 OR4K2Q8NGD2 314 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 SPPL2BQ8TCT7 592 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 ITCHQ96J02 903 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 SLC29A1Q99808 456 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 SMURF2Q9HAU4 748 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 PSMA1P25786 263 aaKnown RBP15.14■□□□□ 0.01
SHH-201ENST00000297261 SLC5A2P31639 672 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 CDKL1Q00532 357 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 SCN1BQ07699 218 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 PRR23BQ6ZRT6 265 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 CLIP4Q8N3C7 705 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 ZYG11BQ9C0D3 744 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 OR51F1A6NGY5 319 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 CAPN14A8MX76 684 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 CXCR6O00574 342 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 ZW10O43264 779 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 SNNO75324 88 aaPredicted RBP15.14■□□□□ 0.01
SHH-201ENST00000297261 POU2F1P14859 743 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 DGKQP52824 942 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 DSC2Q02487 901 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 SKIV2LQ15477 1246 aaKnown RBP15.14■□□□□ 0.01
SHH-201ENST00000297261 GPR156Q8NFN8 814 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 KCTD13Q8WZ19 329 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 SUSD3Q96L08 255 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 BIRC8Q96P09 236 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 CAPN10Q9HC96 672 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 EIF2B4Q9UI10 523 aaKnown RBP15.14■□□□□ 0.01
SHH-201ENST00000297261 FBXW11Q9UKB1 542 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 ABCB7O75027 752 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 PABPC1P11940 636 aaKnown RBP15.14■□□□□ 0.01
SHH-201ENST00000297261 ITIH1P19827 911 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 RXRGP48443 463 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 NKX2-5P52952 324 aaPredicted RBP15.14■□□□□ 0.01
SHH-201ENST00000297261 PIH1D2Q8WWB5 315 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 NSMCE3Q96MG7 304 aa15.14■□□□□ 0.01
SHH-201ENST00000297261 A8MV72 311 aaPredicted RBP15.13■□□□□ 0.01
SHH-201ENST00000297261 HAS3O00219 553 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 OR10H3O60404 316 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 TBC1D25Q3MII6 688 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 RBM48Q5RL73 367 aaKnown RBP15.13■□□□□ 0.01
SHH-201ENST00000297261 RBM20Q5T481 1227 aaKnown RBP15.13■□□□□ 0.01
SHH-201ENST00000297261 SLC15A4Q8N697 577 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 MINDY2Q8NBR6 621 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 IRF2BPLQ9H1B7 796 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 MTIF3Q9H2K0 278 aaKnown RBP15.13■□□□□ 0.01
SHH-201ENST00000297261 IPPKQ9H8X2 491 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 SNX6Q9UNH7 406 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 PRRC2BQ5JSZ5 2229 aaKnown RBP15.13■□□□□ 0.01
SHH-201ENST00000297261 SSNA1O43805 119 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 PRKAR1AP10644 381 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 HECTD3Q5T447 861 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 PPP4R4Q6NUP7 873 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 FBXL19Q6PCT2 694 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 AFTPHQ6ULP2 937 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 STK40Q8N2I9 435 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 ZNF614Q8N883 585 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 NKIRAS2Q9NYR9 191 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 XPNPEP2O43895 674 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 NR2F6P10588 404 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 EFNA1P20827 205 aaPredicted RBP15.13■□□□□ 0.01
SHH-201ENST00000297261 PTPN5P54829 565 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 PITX1P78337 314 aaPredicted RBP15.13■□□□□ 0.01
SHH-201ENST00000297261 C16orf59Q7L2K0 433 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 VN1R5Q7Z5H4 357 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 NPAS4Q8IUM7 802 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 CYP4Z2PQ8N1L4 340 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 BIRC7Q96CA5 298 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 SLC9A7Q96T83 725 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 GPR22Q99680 433 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 KATNBL1Q9H079 304 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 MAP10Q9P2G4 905 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 ZNF490Q9ULM2 529 aaPredicted RBP15.13■□□□□ 0.01
SHH-201ENST00000297261 LYVE1Q9Y5Y7 322 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 SLC28A1O00337 649 aa15.13■□□□□ 0.01
SHH-201ENST00000297261 SDHDO14521 159 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms